RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 RPL9P32969 192 aaKnown RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 LRRC43Q8N309 656 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 FRS2Q8WU20 508 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 CENPIQ92674 756 aaPredicted RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 FERMT1Q9BQL6 677 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 NSRP1Q9H0G5 558 aaKnown RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 ACSS3Q9H6R3 686 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 SYBUQ9NX95 663 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 TRIM33Q9UPN9 1127 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 WDR37Q9Y2I8 494 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 ARPC4-TTLL3A0A0A6YYG9 625 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 DNM1LO00429 736 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 PAGE1O75459 146 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 SPATA31D3P0C874 917 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 HSPA8P11142 646 aaKnown RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 CORO7P57737 925 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 PDE1BQ01064 536 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 PSMD5Q16401 504 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 VARS2Q5ST30 1063 aaKnown RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 SPATA31D4Q6ZUB0 917 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 LRRC8DQ7L1W4 858 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 TAS1R1Q7RTX1 841 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 TBC1D1Q86TI0 1168 aaPredicted RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 FCRL2Q96LA5 508 aaPredicted RBP11.04□□□□□ -0.64
NEDD9-201ENST00000379433 ACBD6Q9BR61 282 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 OSER1Q9NX31 292 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 CARD8Q9Y2G2 431 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 TEX264Q9Y6I9 313 aa11.04□□□□□ -0.64
NEDD9-201ENST00000379433 BPTFQ12830 3046 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 A0A0A0MRY4 1105 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 BCLAF3A2AJT9 711 aaKnown RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 A6NCN8 305 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 ZFXP17010 805 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 NFKB1P19838 968 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 SEPT6Q14141 434 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 POU6F1Q14863 301 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 PDK1Q15118 436 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 KLHL38Q2WGJ6 581 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 C10orf120Q5SQS8 335 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 THOC7Q6I9Y2 204 aaKnown RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 KIAA1841Q6NSI8 718 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 CDHR3Q6ZTQ4 885 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 CFAP52Q8N1V2 620 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 SLC25A41Q8N5S1 370 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 ZNF669Q96BR6 464 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 SPATA13Q96N96 652 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 KLHL5Q96PQ7 755 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 PRDM5Q9NQX1 630 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 GMIPQ9P107 970 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 SNX5Q9Y5X3 404 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 PSAT1Q9Y617 370 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 ARHGAP42A6NI28 874 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 NBNO60934 754 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 TUBP50607 506 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 IL31Q6EBC2 164 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 CD300LGQ6UXG3 332 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 RNF135Q8IUD6 432 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 AUTS2Q8WXX7 1259 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 FAM136AQ96C01 138 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 MOCOSQ96EN8 888 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 MFSD3Q96ES6 412 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 STAMBPL1Q96FJ0 436 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 C11orf84Q9BUA3 381 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-201ENST00000379433 TMEM109Q9BVC6 243 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 HAUS2Q9NVX0 235 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 FBXW11Q9UKB1 542 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 CROTQ9UKG9 612 aa11.03□□□□□ -0.64
NEDD9-201ENST00000379433 GOLGA8CPA6NN73 597 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 C2orf81A6NN90 581 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 COPEO14579 308 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 CHADO15335 359 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 IRF1P10914 325 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 BGNP21810 368 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 MAPRE1Q15691 268 aaKnown RBP11.02□□□□□ -0.64
NEDD9-201ENST00000379433 DCLRE1AQ6PJP8 1040 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 CEP128Q6ZU80 1094 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 LRRC49Q8IUZ0 686 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 PPP1R14CQ8TAE6 165 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 DCAKDQ8WVC6 231 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 ZNF778Q96MU6 729 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 QKIQ96PU8 341 aaKnown RBP eCLIP11.02□□□□□ -0.641e-7■■■■□ 19.7
NEDD9-201ENST00000379433 UPF3AQ9H1J1 476 aaKnown RBP11.02□□□□□ -0.64
NEDD9-201ENST00000379433 VPS11Q9H270 941 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 HPS4Q9NQG7 708 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 PHTF1Q9UMS5 762 aa11.02□□□□□ -0.64
NEDD9-201ENST00000379433 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.02□□□□□ -0.64
NEDD9-201ENST00000379433 HHLA1C9JL84 531 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CCL22O00626 93 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 BUD23O43709 281 aaKnown RBP11.02□□□□□ -0.65
NEDD9-201ENST00000379433 TOMM70O94826 608 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 GLULP15104 373 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 TAC1P20366 129 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 SKIV2L2P42285 1042 aaKnown RBP11.02□□□□□ -0.65
NEDD9-201ENST00000379433 HSP90AA5PQ58FG0 334 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 PPM1JQ5JR12 505 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CKAP2Q8WWK9 683 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 PTPRN2Q92932 1015 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 AGAP2Q99490 1192 aa11.02□□□□□ -0.65
NEDD9-201ENST00000379433 CHRAC1Q9NRG0 131 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms