RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 EXOC2Q96KP1 924 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 ALS2CR12Q96Q35 445 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 NAPGQ99747 312 aaPredicted RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 EPAS1Q99814 870 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 GORASP1Q9BQQ3 440 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 EPC1Q9H2F5 836 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 PDFQ9HBH1 243 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 SLC2A4RGQ9NR83 387 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 THG1LQ9NWX6 298 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 PRKAG3Q9UGI9 489 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 VPS51Q9UID3 782 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 ZMYM5Q9UJ78 669 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 NDRG2Q9UN36 371 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 SORCS3Q9UPU3 1222 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 SAR1BQ9Y6B6 198 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 DOCK9Q9BZ29 2069 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 A0A0A0MRY4 1105 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 CTAGE9A4FU28 777 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 TTC34A8MYJ7 566 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 MIF4GDA9UHW6 222 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 CLDN11O75508 207 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 LATS1O95835 1130 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 DCNP07585 359 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 RBL1P28749 1068 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 ARL4AP40617 200 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 DGKGP49619 791 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 MAXP61244 160 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 GAD2Q05329 585 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 WASHC5Q12768 1159 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 CDH18Q13634 790 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 POLD3Q15054 466 aaPredicted RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 PDGFRLQ15198 375 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 IFI16Q16666 785 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 PUS10Q3MIT2 529 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 TMEM196Q5HYL7 178 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 PITRM1Q5JRX3 1037 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 TJAP1Q5JTD0 557 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 TPRG1Q6ZUI0 275 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 DDX42Q86XP3 938 aaKnown RBP eCLIP4.12□□□□□ -1.75
LIG4-201ENST00000356922 HJURPQ8NCD3 748 aaPredicted RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 SLC35B2Q8TB61 432 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 USP33Q8TEY7 942 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 OTUB2Q96DC9 234 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 UHRF1Q96T88 793 aaPredicted RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 C11orf16Q9NQ32 467 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 CACNA2D2Q9NY47 1150 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 DDX56Q9NY93 547 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 GGA2Q9UJY4 613 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 FCF1Q9Y324 198 aaKnown RBP4.12□□□□□ -1.75
LIG4-201ENST00000356922 RAD54BQ9Y620 910 aa4.12□□□□□ -1.75
LIG4-201ENST00000356922 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 TBC1D3BA6NDS4 549 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TP73O15350 636 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 URI1O94763 535 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 NFATC1O95644 943 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CHRNB1P11230 501 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PABPC1P11940 636 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 MSNP26038 577 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CASQ1P31415 396 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CD68P34810 354 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 ETFBP38117 255 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZNF177Q13360 481 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 NAA30Q147X3 362 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CYTH1Q15438 398 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 OASLQ15646 514 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CCDC181Q5TID7 509 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 MBLAC2Q68D91 279 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TMCO3Q6UWJ1 677 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 FRMD1Q8N878 549 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TERB1Q8NA31 727 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 IL17RCQ8NAC3 791 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 E2F7Q96AV8 911 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 COL25A1Q9BXS0 654 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 CIPCQ9C0C6 399 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 DDX47Q9H0S4 455 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 MUC3BQ9H195 1237 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TNKS2Q9H2K2 1166 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 CD248Q9HCU0 757 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TRPV5Q9NQA5 729 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ELOVL2Q9NXB9 296 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 DEC1Q9P2X7 70 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 IPO11Q9UI26 975 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 VPS28Q9UK41 221 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZNF510Q9Y2H8 683 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 EP300Q09472 2414 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 ILVBLA1L0T0 632 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZSCAN5CA6NGD5 496 aaPredicted RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 H3BRJ5 948 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 SGK1O00141 431 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 INSIG1O15503 277 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RAMP2O60895 175 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ADH1CP00326 375 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 RHOCP08134 193 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 COL9A1P20849 921 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 PRKCHP24723 683 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TIE1P35590 1138 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 GARSP41250 739 aaKnown RBP4.11□□□□□ -1.75
LIG4-201ENST00000356922 IL12RB1P42701 662 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 TERF1P54274 439 aa4.11□□□□□ -1.75
LIG4-201ENST00000356922 ZXDAP98168 799 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms