RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 ZSCAN5CA6NGD5 496 aaPredicted RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ARHGAP42A6NI28 874 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 BTNL10A8MVZ5 291 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 BUB1O43683 1085 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SNAP91O60641 907 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 KRT1P04264 644 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ERCC2P18074 760 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 GABRG2P18507 467 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 NDUFV2P19404 249 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 RECQLP46063 649 aaPredicted RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 HCAR3P49019 387 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CLCN6P51797 869 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 NDST2P52849 883 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TAS2R40P59535 323 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 NHLH1Q02575 133 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PDK2Q15119 407 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 HNRNPA1L2Q32P51 320 aaKnown RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ZNF776Q68DI1 518 aaPredicted RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TXNRD3NBQ6F5E7 133 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 C11orf63Q6NUN7 778 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 KIAA1211LQ6NV74 962 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TMCO3Q6UWJ1 677 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PRR23BQ6ZRT6 265 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DAAM2Q86T65 1068 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 METTL3Q86U44 580 aaKnown RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 C11orf74Q86VG3 221 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CACUL1Q86Y37 369 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 LRRC8AQ8IWT6 810 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 RHOT1Q8IXI2 618 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SH2D3CQ8N5H7 860 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 LZTR1Q8N653 840 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ZBTB44Q8NCP5 570 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 OR2T3Q8NH03 318 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PRCCQ92733 491 aaPredicted RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ARHGEF2Q92974 986 aaKnown RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 MYO19Q96H55 970 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 MRGPRX3Q96LB0 322 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PSMB7Q99436 277 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ZNF670Q9BS34 389 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TSGA10Q9BZW7 698 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PRDM16Q9HAZ2 1276 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 KLHL11Q9NVR0 708 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DDX56Q9NY93 547 aaKnown RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CWC15Q9P013 229 aaKnown RBP11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TFR2Q9UP52 801 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 HS3ST2Q9Y278 367 aa11.25□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TARSL2A2RTX5 802 aaKnown RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TTC34A8MYJ7 566 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 RASA4BC9J798 803 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DFFAO00273 331 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PJA2O43164 708 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 RASA4O43374 803 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 PSTPIP1O43586 416 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 BNIP3LO60238 219 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 BUB1BO60566 1050 aaPredicted RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SIN3BO75182 1162 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ZNF217O75362 1048 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 RPP40O75818 363 aaKnown RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DNTTP04053 509 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SRCP12931 536 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 COMTP21964 271 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ACVRL1P37023 503 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 NBL1P41271 181 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SERPINH1P50454 418 aaKnown RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 VASPP50552 380 aaPredicted RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SLC20A2Q08357 652 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CAMK2GQ13555 558 aaPredicted RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DPYSQ14117 519 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DPYSL3Q14195 570 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TTC31Q49AM3 519 aaPredicted RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ARTNQ5T4W7 220 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 C22orf39Q6P5X5 142 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 LINGO4Q6UY18 593 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 DSG4Q86SJ6 1040 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CPNE8Q86YQ8 564 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TMPRSS6Q8IU80 811 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 UMODL1-AS1Q8N2C9 162 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 GAB3Q8WWW8 586 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 OR8D1Q8WZ84 308 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 NELL1Q92832 810 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SIPA1Q96FS4 1042 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CELF6Q96J87 481 aaKnown RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CSPG4P5Q96PW8 444 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SEMA4AQ9H3S1 761 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SP110Q9HB58 689 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SLCO3A1Q9UIG8 710 aa11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 REXO2Q9Y3B8 237 aaKnown RBP11.24□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 TNRC6BQ9UPQ9 1833 aaKnown RBP11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CXorf51AA0A1B0GTR3 108 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 MACROD2A1Z1Q3 448 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 LRRD1A4D1F6 860 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 KDELR3O43731 214 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 KRT86O43790 486 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 ATP9BO43861 1147 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 LILRB5O75023 590 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 CCDC175P0C221 793 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 GLDCP23378 1020 aa11.23□□□□□ -0.61
CSPG4P1Y-201ENST00000306641 COPAP53621 1224 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms