RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LRRC17Q8N6Y2 441 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 OR9A1PQ8NGU1 263 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 BLZF1Q9H2G9 400 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CABP2Q9NPB3 220 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 NKIRAS2Q9NYR9 191 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 CFAP97Q9P2B7 532 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GINS2Q9Y248 185 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 EML6Q6ZMW3 1958 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 C5orf51A6NDU8 294 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 OR6C70A6NIJ9 312 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 A6NNZ2 444 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 C6orf229H3BNL8 230 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TOM1L1O75674 476 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PLATP00750 562 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CALCAP01258 141 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PKMP14618 531 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LIFRP42702 1097 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 STXBP1P61764 594 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LAPTM5Q13571 262 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC6A19Q695T7 634 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGAP12Q8IWW6 846 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 WACQ9BTA9 647 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TXLNGYQ9BZA5 131 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 C1orf112Q9NSG2 853 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NKIRAS1Q9NYS0 192 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 DNMT3LQ9UJW3 386 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CDK4P11802 303 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SRCP12931 536 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FIGNQ5HY92 759 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FAM205BPQ63HN1 556 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CLEC17AQ6ZS10 378 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PIWIL3Q7Z3Z3 882 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NT5C1BQ96P26 610 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BPIFA3Q9BQP9 254 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 LMBRD1Q9NUN5 540 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF282Q9UDV7 671 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TLL2Q9Y6L7 1015 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FAM47E-STBD1D6RA91 191 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SRP72O76094 671 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CYP1A1P04798 512 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NR3C2P08235 984 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PLS3P13797 630 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 BTF3P20290 206 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RXRBP28702 533 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FEN1P39748 380 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC1A2P43004 574 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 KRR1Q13601 381 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ARID5BQ14865 1188 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PXDC1Q5TGL8 231 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PIWIL4Q7Z3Z4 852 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PARP8Q8N3A8 854 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 C8orf58Q8NAV2 365 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SLC39A13Q96H72 371 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 OPN3Q9H1Y3 402 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 EPB41L1Q9H4G0 881 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TFB2MQ9H5Q4 396 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 MCCC2Q9HCC0 563 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SACM1LQ9NTJ5 587 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ABCG2Q9UNQ0 655 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PLCE1Q9P212 2302 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 K7ERQ8 282 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ASLP04424 464 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ANPEPP15144 967 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 MX1P20591 662 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GSTM5P46439 218 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ALKBH1Q13686 389 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ODF1Q14990 250 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RTP2Q5QGT7 225 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HGSNATQ68CP4 663 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 FJX1Q86VR8 437 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 DENND1CQ8IV53 801 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CROCCP3Q8IVE0 287 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ULK2Q8IYT8 1036 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 VRK1Q99986 396 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZYG11BQ9C0D3 744 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GPRC5BQ9NZH0 403 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 IPO11Q9UI26 975 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CDH7Q9ULB5 785 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHB6Q9Y5E3 794 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF407Q9C0G0 2248 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CCNB3Q8WWL7 1395 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RBAK-RBAKDNI3L0D1 243 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 NDUFS6O75380 124 aaKnown RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 TSHRP16473 764 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RGS8P57771 180 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF280AP59817 542 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HSPA14Q0VDF9 509 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PCBP2Q15366 365 aaKnown RBP eCLIP3.63□□□□□ -1.831e-9■■■■■ 28.3
SCN1A-221ENST00000641996 ZNF827Q17R98 1081 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SCARA5Q6ZMJ2 495 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC185Q8N715 623 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RCBTB1Q8NDN9 531 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 GSTCDQ8NEC7 633 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 PIGOQ8TEQ8 1089 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RLN3Q8WXF3 142 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 HES6Q96HZ4 224 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 KLHL32Q96NJ5 620 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 ZIM3Q96PE6 472 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 SERPINI1Q99574 410 aa3.63□□□□□ -1.83
SCN1A-221ENST00000641996 RBAKQ9NYW8 714 aaPredicted RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms