RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TM7SF2O76062 418 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ATP5BP06576 529 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CTNNB1P35222 781 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ELAVL2Q12926 359 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 QPRTQ15274 297 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 FUT11Q495W5 492 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 SLC9A4Q6AI14 798 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 BEND4Q6ZU67 534 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ARPINQ7Z6K5 226 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ZC3HC1Q86WB0 502 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 SNRNP27Q8WVK2 155 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 FBXO32Q969P5 355 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 BHMT2Q9H2M3 363 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 FBXO44Q9H4M3 255 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 RABGEF1Q9UJ41 708 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PCYT1BQ9Y5K3 369 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CHD3Q12873 2000 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PEG3Q9GZU2 1588 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 VILLO15195 856 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 KAT7O95251 611 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 SLC16A8O95907 504 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CLPTM1O96005 669 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 F9P00740 461 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PDYNP01213 254 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ATF6P18850 670 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PSMB9P28065 219 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PPM1LQ5SGD2 360 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 RTL4Q6ZR62 310 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 USP45Q70EL2 814 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CBWD2Q8IUF1 395 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 C12orf56Q8IXR9 622 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 C17orf53Q8N3J3 647 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ACTRT2Q8TDY3 377 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 MIEF2Q96C03 454 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 DGCR14Q96DF8 476 aaKnown RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ZNF607Q96SK3 696 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CIPCQ9C0C6 399 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 SYT4Q9H2B2 425 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ZNF780BQ9Y6R6 833 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 USP19O94966 1318 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PTPRKQ15262 1439 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ARFGEF3Q5TH69 2177 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CCDC154A6NI56 674 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PPEF2O14830 753 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ZBTB5O15062 677 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 RECQL5O94762 991 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CCNE1P24864 410 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 MLLT6P55198 1093 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 FCGRTP55899 365 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 WDR72Q3MJ13 1102 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ATF7IP2Q5U623 682 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 GRAMD1CQ8IYS0 662 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 PHC3Q8NDX5 983 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 ZNF563Q8TA94 476 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 RNF25Q96BH1 459 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-212ENST00000636194 MS4A14Q96JA4 679 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 KLHL15Q96M94 604 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 LRMDAQ9H2I8 198 aa6.11□□□□□ -1.43
SCN1A-212ENST00000636194 CPSF4O95639 269 aaKnown RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 MBL2P11226 248 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 GNB3P16520 340 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 CASP6P55212 293 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 PTH1RQ03431 593 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 NR6A1Q15406 480 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 RABL6Q3YEC7 729 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 C3orf62Q6ZUJ4 267 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 METTL3Q86U44 580 aaKnown RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 LONP2Q86WA8 852 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 ZDHHC13Q8IUH4 622 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 CMTR2Q8IYT2 770 aaKnown RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 ATL1Q8WXF7 558 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 RFFLQ8WZ73 363 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 TP53INP1Q96A56 240 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 ZNF594Q96JF6 807 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 KCTD10Q9H3F6 313 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 POLE4Q9NR33 117 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 TLR8Q9NR97 1041 aaKnown RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 ADAMTS1Q9UHI8 967 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 RAPGEF6Q8TEU7 1601 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 QSOX1O00391 747 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 CHST10O43529 356 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 PLOD3O60568 738 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 RLN2P04090 185 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 FAM58BPP0C7Q3 252 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 CYP2C8P10632 490 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 SLC2A4P14672 509 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 GCLMP48507 274 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 IL17RAQ96F46 866 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 MAGEB16A2A368 324 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 KERAO60938 352 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 OR5F1O95221 314 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 PLGP00747 810 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 ANPEPP15144 967 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 SERPINA4P29622 427 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 PRKAA2P54646 552 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 GEMP55040 296 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 FASTKD3Q14CZ7 662 aaKnown RBP6.1□□□□□ -1.43
SCN1A-212ENST00000636194 C5orf22Q49AR2 442 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 TMEM17Q86X19 198 aa6.1□□□□□ -1.43
SCN1A-212ENST00000636194 TEX47Q8TBZ9 253 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms