RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KLHL32Q96NJ5 620 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CALN1Q9BXU9 219 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 DRC3Q9H069 523 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 SDCBP2Q9H190 292 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 RPF2Q9H7B2 306 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CXorf21Q9HAI6 301 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 HESX1Q9UBX0 185 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CPA4Q9UI42 421 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 GIT1Q9Y2X7 761 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TRIM64BA6NI03 449 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 KPNA7A9QM74 516 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CFAP99D6REC4 459 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 H3BMQ9 156 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 KPNA4O00629 521 aaPredicted RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 SNAP91O60641 907 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 VNN1O95497 513 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TOP3BO95985 862 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 APRTP07741 180 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 MAGEA3P43357 314 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 ATP1A4Q13733 1029 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 XKR9Q5GH70 373 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 SNRNP48Q6IEG0 339 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 NANOGP8Q6NSW7 305 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TTC30AQ86WT1 665 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TRIM50Q86XT4 487 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 COLGALT2Q8IYK4 626 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CPXCR1Q8N123 301 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CNTD1Q8N815 330 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 STARD8Q92502 1023 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 COG8Q96MW5 612 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 C1orf50Q9BV19 199 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 APOBEC3GQ9HC16 384 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 MOCS1Q9NZB8 636 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 SUCOQ9UBS9 1254 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 PACSIN3Q9UKS6 424 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 ERGIC3Q9Y282 383 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 PTPRFP10586 1907 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TPP1O14773 563 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 CFLARO15519 480 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 HTRA2O43464 458 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 ALDOAP04075 364 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 ENO3P13929 434 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 RFC1P35251 1148 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PKNOX1P55347 436 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 NR1D2Q14995 579 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 NDUFA5Q16718 116 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 SLC9B1Q4ZJI4 515 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 IRAK1BP1Q5VVH5 260 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 IL23RQ5VWK5 629 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TRMT10BQ6PF06 316 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TTC33Q6PID6 262 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 SLC2A7Q6PXP3 512 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 MAMDC4Q6UXC1 1216 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 LYSMD3Q7Z3D4 306 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 NANOGNBQ7Z5D8 188 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PACRGLQ8N7B6 248 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 FAM47BQ8NA70 645 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PDPRQ8NCN5 879 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 KCNN1Q92952 543 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 RCN3Q96D15 328 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 CNDP2Q96KP4 475 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 KIFC3Q9BVG8 833 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TRPV6Q9H1D0 765 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TUT1Q9H6E5 874 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 KCNH7Q9NS40 1196 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 ARHGAP28Q9P2N2 729 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PCDHGC3Q9UN70 934 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TRIM64A6NGJ6 449 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 VWA5AO00534 786 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 MAFGO15525 162 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 KCNN4O15554 427 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PEX10O60683 326 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 ATE1O95260 518 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TPSB2P20231 275 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 JAK1P23458 1154 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 RHDQ02161 417 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 PTK2BQ14289 1009 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TPSAB1Q15661 275 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 EGFLAMQ63HQ2 1017 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 EEPD1Q7L9B9 569 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 GTF3C2Q8WUA4 911 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 DUS3LQ96G46 650 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 SIGLEC10Q96LC7 697 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 ZMAT2Q96NC0 199 aaKnown RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 UHRF1Q96T88 793 aaPredicted RBP11.03□□□□□ -0.64
UPF3A-212ENST00000619079 MAN1C1Q9NR34 630 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 MRGBPQ9NV56 204 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 CDC14AQ9UNH5 594 aa11.03□□□□□ -0.64
UPF3A-212ENST00000619079 LOC285556D6RIA3 1793 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 ALDH1A2O94788 518 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 OXSR1O95747 527 aaPredicted RBP11.02□□□□□ -0.65
UPF3A-212ENST00000619079 GARSP41250 739 aaKnown RBP11.02□□□□□ -0.65
UPF3A-212ENST00000619079 PSMD8P48556 350 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 NRLP54845 237 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 TRIM16LQ309B1 348 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 LMBRD2Q68DH5 695 aaPredicted RBP11.02□□□□□ -0.65
UPF3A-212ENST00000619079 OGFOD2Q6N063 350 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 NEPROQ6NW34 567 aa11.02□□□□□ -0.65
UPF3A-212ENST00000619079 MYO1HQ8N1T3 1032 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms