RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TNNT1P13805 278 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 POLR2EP19388 210 aaKnown RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 IL4RP24394 825 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 SSR1P43307 286 aaKnown RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 MARCKSL1P49006 195 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 COPAP53621 1224 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 ZNF177Q13360 481 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 FNDC3BQ53EP0 1204 aaKnown RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 SERPINA13PQ6UXR4 307 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 MAMSTRQ6ZN01 415 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 ARHGAP36Q6ZRI8 547 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 NIPA2Q8N8Q9 360 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 MUC3BQ9H195 1237 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 KIAA1522Q9P206 1035 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 EBF1Q9UH73 591 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 VPS51Q9UID3 782 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 SLC8A2Q9UPR5 921 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 ERVW-1Q9UQF0 538 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 EIF3CLB5ME19 914 aaKnown RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 PROSCO94903 275 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 LRRC31Q6UY01 552 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 TSTD1Q8NFU3 115 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 RFFLQ8WZ73 363 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 TBC1D31Q96DN5 1066 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 EIF3CQ99613 913 aaKnown RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 IP6K2Q9UHH9 426 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 PAXBP1Q9Y5B6 917 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 ADAMTS9Q9P2N4 1935 aa13.83□□□□□ -0.19
LINC00540-202ENST00000616974 TNRC6BQ9UPQ9 1833 aaKnown RBP13.83□□□□□ -0.2
LINC00540-202ENST00000616974 BUB1BO60566 1050 aaPredicted RBP13.83□□□□□ -0.2
LINC00540-202ENST00000616974 BCKDHBP21953 392 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 AMPD1P23109 780 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 PCK1P35558 622 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 MAGEA9P43362 315 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 DGKEP52429 567 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 ARF5P84085 180 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 NRG1Q02297 640 aaPredicted RBP13.83□□□□□ -0.2
LINC00540-202ENST00000616974 TMTC1Q8IUR5 882 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 ZBTB44Q8NCP5 570 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 RAPGEF5Q92565 580 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 ZNF830Q96NB3 372 aaPredicted RBP13.83□□□□□ -0.2
LINC00540-202ENST00000616974 SPON2Q9BUD6 331 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 PCDH18Q9HCL0 1135 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 TMEM248Q9NWD8 314 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 IMPACTQ9P2X3 320 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 UVRAGQ9P2Y5 699 aa13.83□□□□□ -0.2
LINC00540-202ENST00000616974 PPARGC1AQ9UBK2 798 aaKnown RBP13.83□□□□□ -0.2
LINC00540-202ENST00000616974 CBX4O00257 560 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PLK4O00444 970 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 SIN3BO75182 1162 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ZMPSTE24O75844 475 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PAPSS2O95340 614 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ECT2LQ008S8 904 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PIGHQ14442 188 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 EIF4HQ15056 248 aaKnown RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 TTC39BQ5VTQ0 682 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 CCDC170Q8IYT3 715 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PTPRN2Q92932 1015 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ACDQ96AP0 544 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 MRGPRX1Q96LB2 322 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PRSS16Q9NQE7 514 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 FBXO4Q9UKT5 387 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 EEF2KO00418 725 aaKnown RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 BNIP3LO60238 219 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ZNF821O75541 412 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ERCC2P18074 760 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ARSEP51690 589 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 TPI1P60174 286 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 CCZ1BP86790 482 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 CCZ1P86791 482 aaPredicted RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 GNA12Q03113 381 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 POM121L1PQ3SYA9 428 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 RFX8Q6ZV50 586 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 Q6ZVU0 165 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 POLNQ7Z5Q5 900 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 RASSF3Q86WH2 238 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 DEFB119Q8N690 84 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 RTL3Q8N8U3 475 aaKnown RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 FRS2Q8WU20 508 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 VOPP1Q96AW1 172 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 HMCESQ96FZ2 354 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 TNKS2Q9H2K2 1166 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 SERGEFQ9UGK8 458 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 PLA2G4CQ9UP65 541 aa13.82□□□□□ -0.2
LINC00540-202ENST00000616974 FCF1Q9Y324 198 aaKnown RBP13.82□□□□□ -0.2
LINC00540-202ENST00000616974 ATG13O75143 517 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 GJB3O75712 270 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 SRCP12931 536 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 RHOQP17081 205 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 COMTP21964 271 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 CYLC1P35663 651 aaPredicted RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 PTPN5P54829 565 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 DPYSQ14117 519 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 DPYSL2Q16555 572 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 ARHGAP12Q8IWW6 846 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 WFIKKN2Q8TEU8 576 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 ARHGEF2Q92974 986 aaKnown RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 EXOC4Q96A65 974 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 ATP13A1Q9HD20 1204 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms