RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ARCQ7LC44 396 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SCD5Q86SK9 330 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 RHOT1Q8IXI2 618 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 CHPFQ8IZ52 775 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 UBL4BQ8N7F7 174 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 COG1Q8WTW3 980 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 FAM172AQ8WUF8 416 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 GOLGA1Q92805 767 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 WBP2Q969T9 261 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 TBCBQ99426 244 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SCNM1Q9BWG6 230 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 BBS2Q9BXC9 721 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 KLF16Q9BXK1 252 aaPredicted RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 TMEM121BQ9BXQ6 578 aaPredicted RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 NMUR1Q9HB89 426 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 DNAJC17Q9NVM6 304 aaKnown RBP13.09□□□□□ -0.31
UPF1-208ENST00000600012 KLHL11Q9NVR0 708 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SMARCAL1Q9NZC9 954 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 MARK1Q9P0L2 795 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 CDC23Q9UJX2 597 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 ZMIZ1Q9ULJ6 1067 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SCML2Q9UQR0 700 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 PCDHA3Q9Y5H8 950 aa13.09□□□□□ -0.31
UPF1-208ENST00000600012 SYNJ2BP-COX16A0A087WUM0 186 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 A0A1W2PQF6 199 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 A0A1W2PQH9 124 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 CCDC66A2RUB6 948 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 UPK3BL1B0FP48 263 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 UPK3BL2E5RIL1 263 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 NEDD8-MDP1E9PL57 170 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 TRIM24O15164 1050 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 PSTPIP1O43586 416 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 GREM1O60565 184 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 RNF8O76064 485 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 SERPINF2P08697 491 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 NCAM1P13591 858 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 TYRP14679 529 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 MIPP30301 263 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 NOS2P35228 1153 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 ATP5C1P36542 298 aaKnown RBP13.08□□□□□ -0.32
UPF1-208ENST00000600012 WASP42768 502 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 PEX5P50542 639 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 SLC25A11Q02978 314 aaKnown RBP13.08□□□□□ -0.32
UPF1-208ENST00000600012 ZNF33AQ06730 810 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 SEMA3BQ13214 749 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 EGFLAMQ63HQ2 1017 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 TXNRD3NBQ6F5E7 133 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 AADACL2Q6P093 401 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 MIB1Q86YT6 1006 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 HDDC3Q8N4P3 179 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 MS4A14Q96JA4 679 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 PEBP4Q96S96 227 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 ZWILCHQ9H900 591 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 CAPN10Q9HC96 672 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 COX16Q9P0S2 106 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 PCSK1NQ9UHG2 260 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 HCN2Q9UL51 889 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 STAP1Q9ULZ2 295 aa13.08□□□□□ -0.32
UPF1-208ENST00000600012 ZFHX4Q86UP3 3567 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 IGHV1OR15-9A0A0B4J2B8 117 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 TBX18O95935 607 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 TOP3BO95985 862 aaKnown RBP13.07□□□□□ -0.32
UPF1-208ENST00000600012 KRT1P04264 644 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 PRLRP16471 622 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 DESP17661 470 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 NDUFV2P19404 249 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 IL1R2P27930 398 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 HDAC4P56524 1084 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 RWDD2BP57060 319 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 ACAP1Q15027 740 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 SMTNL2Q2TAL5 461 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 SLC25A52Q3SY17 297 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 ATP13A4Q4VNC1 1196 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 SCYL2Q6P3W7 929 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 KLHDC10Q6PID8 442 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 TPGS1Q6ZTW0 290 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 PIP4P1Q86T03 277 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 ADAM32Q8TC27 787 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 GATA6Q92908 595 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 PBKQ96KB5 322 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 NPY6RQ99463 290 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 GABRG3Q99928 467 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 GTPBP2Q9BX10 602 aaKnown RBP13.07□□□□□ -0.32
UPF1-208ENST00000600012 L2HGDHQ9H9P8 463 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 CD248Q9HCU0 757 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 OSER1Q9NX31 292 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 NEUROG3Q9Y4Z2 214 aa13.07□□□□□ -0.32
UPF1-208ENST00000600012 PRRT4C9JH25 899 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 M0QYT0 321 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 PDE2AO00408 941 aaPredicted RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 GFRA2O00451 464 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 RIOK3O14730 519 aaKnown RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 CEP104O60308 925 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 OPHN1O60890 802 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 TRUB2O95900 331 aaKnown RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 PYGMP11217 842 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 PCK1P35558 622 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 DGKGP49619 791 aa13.06□□□□□ -0.32
UPF1-208ENST00000600012 SIM1P81133 766 aaPredicted RBP13.06□□□□□ -0.32
UPF1-208ENST00000600012 NME3Q13232 169 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms