RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TK2O00142 265 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 CBX4O00257 560 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 CAPN9O14815 690 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 MOCS2O96007 188 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 IL1BP01584 269 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 IGLV3-25P01717 112 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3HP0C7X1 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 DRD3P35462 400 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 EIF2S3P41091 472 aaKnown RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TARDBPQ13148 414 aaKnown RBP eCLIP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 EIF4EBP2Q13542 120 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 ZC3H12AQ5D1E8 599 aaKnown RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TTC39BQ5VTQ0 682 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SFMBT2Q5VUG0 894 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SYPL2Q5VXT5 272 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 RAP1GAP2Q684P5 730 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3GQ6DHY5 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3CQ6IPX1 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 DPY19L2P1Q6NXN4 242 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 DENND1BQ6P3S1 775 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TRIM65Q6PJ69 517 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 DSG4Q86SJ6 1040 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TMEM110Q86TL2 294 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 CHSY1Q86X52 802 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 CREBRFQ8IUR6 639 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3Q8IZP1 549 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 ATP6V0D2Q8N8Y2 350 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 ADAM32Q8TC27 787 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 RPL10LQ96L21 214 aaKnown RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 DCBLD2Q96PD2 775 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SPAG5Q96R06 1193 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 PPP1R9BQ96SB3 815 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SLC4A5Q9BY07 1137 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 POPDC2Q9HBU9 364 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 ST7Q9NRC1 585 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 ARHGAP20Q9P2F6 1191 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 SLC12A6Q9UHW9 1150 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 CYTH4Q9UIA0 394 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 XPO7Q9UIA9 1087 aaKnown RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 KCNU1A8MYU2 1149 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 F5H5T6 163 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 RRP8O43159 456 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 TRUB2O95900 331 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 SLC2A3P11169 496 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 CKMT2P17540 419 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 PON1P27169 355 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 YWHAZP63104 245 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 BNIP3Q12983 259 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 HES3Q5TGS1 186 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 FAM46CQ5VWP2 391 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 LRRC69Q6ZNQ3 347 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 KANSL1Q7Z3B3 1105 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 SPATS2Q86XZ4 545 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 CCAR2Q8N163 923 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 PIP4K2CQ8TBX8 421 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 GPT2Q8TD30 523 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 FRS2Q8WU20 508 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 RFFLQ8WZ73 363 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 CRELD1Q96HD1 420 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 PRMT1Q99873 361 aaKnown RBP12.89□□□□□ -0.35
TRIM28-212ENST00000597995 NUP62CLQ9H1M0 184 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 THAP9Q9H5L6 903 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 PRORYQ9H606 182 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 SIX2Q9NPC8 291 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 AK5Q9Y6K8 562 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 SHROOM3Q8TF72 1996 aa12.89□□□□□ -0.35
TRIM28-212ENST00000597995 BPTFQ12830 3046 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 A0A1B0GVM2 712 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 GTPBP10A4D1E9 387 aaKnown RBP12.88□□□□□ -0.35
TRIM28-212ENST00000597995 TCAF2A6NFQ2 919 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 ALOX15BO15296 676 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 MED7O43513 233 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 PLRG1O43660 514 aaKnown RBP12.88□□□□□ -0.35
TRIM28-212ENST00000597995 ATP9BO43861 1147 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 KRT5P13647 590 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 PDGFRAP16234 1089 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 STK19P49842 368 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-212ENST00000597995 PPP2CBP62714 309 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 PPP2CAP67775 309 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 SEMG2Q02383 582 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 C19orf57Q0VDD7 668 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 MTA1Q13330 715 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 STAT4Q14765 748 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 HSP90AA4PQ58FG1 418 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 MIIPQ5JXC2 388 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 RABGAP1LQ5R372 815 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 GBP6Q6ZN66 633 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 TRIM69Q86WT6 500 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 LSM14AQ8ND56 463 aaKnown RBP12.88□□□□□ -0.35
TRIM28-212ENST00000597995 SNIP1Q8TAD8 396 aaKnown RBP12.88□□□□□ -0.35
TRIM28-212ENST00000597995 ZNF606Q8WXB4 792 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 OR8D1Q8WZ84 308 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 BAP1Q92560 729 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 PPM1HQ9ULR3 514 aa12.88□□□□□ -0.35
TRIM28-212ENST00000597995 GCN1Q92616 2671 aaKnown RBP12.87□□□□□ -0.35
TRIM28-212ENST00000597995 E5RJQ4 531 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 PRAMEF26H0Y7S4 382 aa12.87□□□□□ -0.35
TRIM28-212ENST00000597995 MCF2LO15068 1137 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms