RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SLC2A3	P11169	496 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	PON1	P27169	355 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	MAT2A	P31153	395 aa	Known RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	NNMT	P40261	264 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	CYP4F3	Q08477	520 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	DNAJC3	Q13217	504 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	CAMK2B	Q13554	666 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	SLC12A1	Q13621	1099 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	AUH	Q13825	339 aa	Known RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	SMAD1	Q15797	465 aa	Known RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	CAMK4	Q16566	473 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	ACCSL	Q4AC99	568 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	RABGAP1L	Q5R372	815 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	OTUD1	Q5VV17	481 aa	Predicted RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3G	Q6DHY5	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	OR6B2	Q6IFH4	312 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3C	Q6IPX1	549 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	OLFML1	Q6UWY5	402 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	GBP6	Q6ZN66	633 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776		Q6ZVU0	165 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	C14orf80	Q86SX3	495 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	IRF2BP1	Q8IU81	584 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TBC1D3	Q8IZP1	549 aa	Predicted RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	GALNT15	Q8N3T1	639 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	SKA1	Q96BD8	255 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	ALG14	Q96F25	216 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	SPAG5	Q96R06	1193 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	PLCB1	Q9NQ66	1216 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	GDF3	Q9NR23	364 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	RWDD2A	Q9UIY3	292 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	HS3ST4	Q9Y661	456 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	ADAMTS20	P59510	1910 aa		10.84	□□□□□ -0.67
LSM4-205	ENST00000597776	TLR4	O00206	839 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	ENC1	O14682	589 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	LAT	O43561	262 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	ATP9B	O43861	1147 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	BNIP3L	O60238	219 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	PAGE1	O75459	146 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	GLI1	P08151	1106 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	TFE3	P19532	575 aa	Predicted RBP	10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	EPHA8	P29322	1005 aa	Predicted RBP	10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	PLK1	P53350	603 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	NXPH1	P58417	271 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SULT2A1	Q06520	285 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	EXOC3L4	Q17RC7	722 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	PTPN20	Q4JDL3	420 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	EFHC1	Q5JVL4	640 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	AGBL4	Q5VU57	503 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	C11orf57	Q6ZUT1	292 aa	Predicted RBP	10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	PDZD3	Q86UT5	571 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC47A2	Q86VL8	602 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SPATS2	Q86XZ4	545 aa	Known RBP	10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	EID2	Q8N6I1	236 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SAP25	Q8TEE9	199 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	OR8D1	Q8WZ84	308 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	CNDP2	Q96KP4	475 aa	Known RBP	10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	FEM1A	Q9BSK4	669 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SIK2	Q9H0K1	926 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SIX2	Q9NPC8	291 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	ANLN	Q9NQW6	1124 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	ASNSD1	Q9NWL6	643 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	KIAA1468	Q9P260	1216 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC25A13	Q9UJS0	675 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	VPS28	Q9UK41	221 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	PCDHGC3	Q9UN70	934 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	OR51B4	Q9Y5P0	310 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	SNX10	Q9Y5X0	201 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	BAHCC1	Q9P281	2608 aa		10.83	□□□□□ -0.68
LSM4-205	ENST00000597776	COL5A1	P20908	1838 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776		I6L893	689 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776		M0QYT0	321 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	FOXN3	O00409	490 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	PLRG1	O43660	514 aa	Known RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	DAB1	O75553	588 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	CNTN5	O94779	1100 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	LDOC1	O95751	146 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	MT-CO1	P00395	513 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	MTIF2	P46199	727 aa	Known RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	OXCT1	P55809	520 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	PTK2	Q05397	1052 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	CNTN1	Q12860	1018 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	BNIP3	Q12983	259 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	ZNF177	Q13360	481 aa	Predicted RBP	10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	DLG2	Q15700	870 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	NAPEPLD	Q6IQ20	393 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	SLC26A9	Q7LBE3	791 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	DSG4	Q86SJ6	1040 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	PIP4K2C	Q8TBX8	421 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	FAM131C	Q96AQ9	280 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	FAM81B	Q96LP2	452 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	NOX5	Q96PH1	765 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	MYOC	Q99972	504 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	MUC3B	Q9H195	1237 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	SYNC	Q9H7C4	482 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	PIGV	Q9NUD9	493 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	ARHGAP20	Q9P2F6	1191 aa		10.82	□□□□□ -0.68
LSM4-205	ENST00000597776	DKK4	Q9UBT3	224 aa		10.82	□□□□□ -0.68

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