RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 SGK1O00141 431 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 SMAD6O43541 496 aaKnown RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 PSTPIP1O43586 416 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 KRT86O43790 486 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PEX11BO96011 259 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PTMAP06454 111 aaKnown RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 PYGMP11217 842 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 COL9A1P20849 921 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 OR1E1P30953 314 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 GJC1P36383 396 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 IL12RB1P42701 662 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZNF135P52742 658 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 TPI1P60174 286 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 ARF5P84085 180 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 MTAPQ13126 283 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 SLC12A1Q13621 1099 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZNF234Q14588 700 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PAFAH1B3Q15102 231 aaKnown RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 DGKKQ5KSL6 1271 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 MEI1Q5TIA1 1274 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 NCBP2-AS2Q69YL0 99 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 SLC9A4Q6AI14 798 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZNF783Q6ZMS7 281 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 ARHGAP36Q6ZRI8 547 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 AHI1Q8N157 1196 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 C17orf53Q8N3J3 647 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 SYNPOQ8N3V7 929 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 ALLCQ8N6M5 410 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PLD5Q8N7P1 536 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 KCTD6Q8NC69 237 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 FRS2Q8WU20 508 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 CYB5D2Q8WUJ1 264 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 RNF25Q96BH1 459 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZNF419Q96HQ0 510 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZNF670Q9BS34 389 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 TLR10Q9BXR5 811 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 MTG2Q9H4K7 406 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 PDFQ9HBH1 243 aa10.84□□□□□ -0.67
LIG1-210ENST00000596332 TRMT1Q9NXH9 659 aaKnown RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 RCOR3Q9P2K3 495 aaPredicted RBP10.84□□□□□ -0.67
LIG1-210ENST00000596332 ZDBF2Q9HCK1 2354 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 hCG_1818297A0A087WSY0 165 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 RASA4BC9J798 803 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 K7ERQ8 282 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 K7ESF4 209 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 RNF103O00237 685 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 FGF10O15520 208 aaPredicted RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 RASA4O43374 803 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 TIMM44O43615 452 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 SPOPO43791 374 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 RHOCP08134 193 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 DLDP09622 509 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 KRT10P13645 584 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 PRKCHP24723 683 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 TIE1P35590 1138 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 SSR1P43307 286 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 STK19P49842 368 aaPredicted RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 SEC13P55735 322 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 MRPS21P82921 87 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 SERINC3Q13530 473 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 CDH18Q13634 790 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 DMC1Q14565 340 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 FBXO43Q4G163 708 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 FAM182AQ5T1J6 154 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 KIAA1211LQ6NV74 962 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 SPOCD1Q6ZMY3 1216 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 EXD1Q8NHP7 514 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 RPLP0P6Q8NHW5 317 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 KCNV2Q8TDN2 545 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 WFIKKN2Q8TEU8 576 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 HMCESQ96FZ2 354 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 CELF6Q96J87 481 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 RPL10LQ96L21 214 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 NSMCE3Q96MG7 304 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 GABRG3Q99928 467 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 TSGA10Q9BZW7 698 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 MAGEH1Q9H213 219 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 VPS51Q9UID3 782 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 ERVW-1Q9UQF0 538 aa10.83□□□□□ -0.68
LIG1-210ENST00000596332 MRPS17Q9Y2R5 130 aaKnown RBP10.83□□□□□ -0.68
LIG1-210ENST00000596332 CCDC66A2RUB6 948 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 LRRD1A4D1F6 860 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 TTC34A8MYJ7 566 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 H3BRJ5 948 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 J3KR12 359 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 KDELR3O43731 214 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 ATP9BO43861 1147 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 SRCP12931 536 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 TNNT1P13805 278 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 VAV1P15498 845 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 DESP17661 470 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 PTPN7P35236 360 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 WASP42768 502 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 PAPOLAP51003 745 aaKnown RBP10.82□□□□□ -0.68
LIG1-210ENST00000596332 NDST2P52849 883 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 YBEYP58557 167 aaPredicted RBP10.82□□□□□ -0.68
LIG1-210ENST00000596332 ECT2LQ008S8 904 aa10.82□□□□□ -0.68
LIG1-210ENST00000596332 SATB1Q01826 763 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms