RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CDC25BP30305 580 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 P2RY2P41231 377 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 ZNF135P52742 658 aaPredicted RBP15.41■□□□□ 0.06
UPF1-202ENST00000594243 COPAP53621 1224 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 GNA12Q03113 381 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 HNRNPA1L2Q32P51 320 aaKnown RBP15.41■□□□□ 0.06
UPF1-202ENST00000594243 LAIR1Q6GTX8 287 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 NLRP14Q86W24 1093 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 ZNF366Q8N895 744 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 ERLEC1Q96DZ1 483 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 SIPA1Q96FS4 1042 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 SNRNP25Q9BV90 132 aaKnown RBP15.41■□□□□ 0.06
UPF1-202ENST00000594243 PACSIN1Q9BY11 444 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 MKRN2Q9H000 416 aaKnown RBP15.41■□□□□ 0.06
UPF1-202ENST00000594243 MAGEH1Q9H213 219 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 DHX35Q9H5Z1 703 aaKnown RBP15.41■□□□□ 0.06
UPF1-202ENST00000594243 PRSS16Q9NQE7 514 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 IMPACTQ9P2X3 320 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 SLCO3A1Q9UIG8 710 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 INTUQ9ULD6 942 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 VPS13AQ96RL7 3174 aa15.41■□□□□ 0.06
UPF1-202ENST00000594243 MYO15AQ9UKN7 3530 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 A0A0D9SEW6 157 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 EDDM13A0A1B0GTR0 161 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 TTC34A8MYJ7 566 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 FGF10O15520 208 aaPredicted RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 MAP3K13O43283 966 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 RNASEH1O60930 286 aaKnown RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 CYLC1P35663 651 aaPredicted RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 NUMBP49757 651 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 TPI1P60174 286 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 SLC20A2Q08357 652 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 SEMA3BQ13214 749 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 ELF2Q15723 593 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 HADHQ16836 314 aaKnown RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 ACCSLQ4AC99 568 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 IL31Q6EBC2 164 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 KIAA1324Q6UXG2 1013 aaKnown RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 SLC36A4Q6YBV0 504 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 TMTC1Q8IUR5 882 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 RHOT2Q8IXI1 618 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 DCAF4L2Q8NA75 395 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 RLN3Q8WXF3 142 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 RUBCNQ92622 972 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 LOXL4Q96JB6 756 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 BTBD6Q96KE9 485 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 PEBP4Q96S96 227 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 PSMB7Q99436 277 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 SPON2Q9BUD6 331 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 ATP13A1Q9HD20 1204 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 LUC7LQ9NQ29 371 aaKnown RBP15.4■□□□□ 0.06
UPF1-202ENST00000594243 ITM2CQ9NQX7 267 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 DNAI1Q9UI46 699 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 GMEB2Q9UKD1 530 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 HPCAL4Q9UM19 191 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 INVSQ9Y283 1065 aa15.4■□□□□ 0.06
UPF1-202ENST00000594243 FANCMQ8IYD8 2048 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 DMDP11532 3685 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 RIF1Q5UIP0 2472 aaKnown RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 CXorf51AA0A1B0GTR3 108 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 WASH4PA8MWX3 477 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 EEF2KO00418 725 aaKnown RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 DCLK1O15075 740 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 DAPK3O43293 454 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 ATP9BO43861 1147 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 RAMP2O60895 175 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 MAGEA1P43355 309 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 HCAR3P49019 387 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 STK19P49842 368 aaPredicted RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 ZBTB16Q05516 673 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 POLD3Q15054 466 aaPredicted RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 SPA17Q15506 151 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 LPAL2Q16609 132 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 MAP7D1Q3KQU3 841 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 PLK5Q496M5 336 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 C9orf64Q5T6V5 341 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 RETSATQ6NUM9 610 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 KBTBD6Q86V97 674 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 SH2D3CQ8N5H7 860 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 FAM160A2Q8N612 972 aaPredicted RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 RTL3Q8N8U3 475 aaKnown RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 ATP11CQ8NB49 1132 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 OR7D4Q8NG98 312 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 SLC35G2Q8TBE7 412 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 PTPRN2Q92932 1015 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 DUSP15Q9H1R2 295 aaPredicted RBP15.39■□□□□ 0.05
UPF1-202ENST00000594243 SLC6A17Q9H1V8 727 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 ZWILCHQ9H900 591 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 NDFIP2Q9NV92 336 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 GPATCH2LQ9NWQ4 482 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 NCDNQ9UBB6 729 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 VPS51Q9UID3 782 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 NEU3Q9UQ49 428 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 HS3ST2Q9Y278 367 aa15.39■□□□□ 0.05
UPF1-202ENST00000594243 CFAP54Q96N23 3096 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 GOLGA6L6A8MZA4 724 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 CBX4O00257 560 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 SIN3BO75182 1162 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 PROSCO94903 275 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms