RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CNTNAP1P78357 1384 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GOLGA4Q13439 2230 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GTPBP10A4D1E9 387 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 WTIPA6NIX2 430 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CHURC1-FNTBB4DL54 471 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PPP1R3GB7ZBB8 358 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GTPBP1O00178 669 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 NRP1O14786 923 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 VEGFDO43915 354 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF862O60290 1169 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 OPHN1O60890 802 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF217O75362 1048 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 WFS1O76024 890 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 POP4O95707 220 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PLGP00747 810 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 HIST1H2ABP04908 130 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ADH5P11766 374 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PABPC1P11940 636 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CDH2P19022 906 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GLRA2P23416 452 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CORO1AP31146 461 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CTSOP43234 321 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GPD2P43304 727 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 IL2P60568 153 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC6A3Q01959 620 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ADCY2Q08462 1091 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 STX4Q12846 297 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SF3A3Q12874 501 aaKnown RBP eCLIP2.98□□□□□ -1.932e-6■■■■□ 26.1
SMCHD1-203ENST00000577880 GRB14Q14449 540 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SPARCL1Q14515 664 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CBX2Q14781 532 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ATP13A5Q4VNC0 1218 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 EPC2Q52LR7 807 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ALFQ53S48 1182 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ERMARDQ5T6L9 678 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 LYPLAL1Q5VWZ2 237 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ACAD10Q6JQN1 1059 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PRSS55Q6UWB4 352 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SYDE1Q6ZW31 735 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 HIST3H2AQ7L7L0 130 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 LMNTD2Q8IXW0 634 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 TRIML2Q8N7C3 387 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM46DQ8NEK8 389 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ZFP28Q8NHY6 868 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF507Q8TCN5 953 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 DIS3LQ8TF46 1054 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 MAML1Q92585 1016 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 HIST1H2ACQ93077 130 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 STAMBPL1Q96FJ0 436 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SNF8Q96H20 258 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 DCBLD2Q96PD2 775 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 INPP4AQ96PE3 977 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RBBP8Q99708 897 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GSDMCQ9BYG8 508 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 FRMD8P1Q9BZ68 369 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PABPC3Q9H361 631 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 LRRC40Q9H9A6 602 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RNF19AQ9NV58 838 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 NDE1Q9NXR1 346 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 IGSF9Q9P2J2 1179 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 VTI1BQ9UEU0 232 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 GTF2A1LQ9UNN4 478 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RP1L1Q8IWN7 2480 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SMIM28A0A1B0GU29 152 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM187AA6NFU0 413 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SNTNA6NMZ2 147 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PIK3CDO00329 1044 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 TRDMT1O14717 391 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC25A12O75746 678 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 DNAJC8O75937 253 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 TM7SF2O76062 418 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CDK14O94921 469 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ALPPP05187 535 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 UGT2B4P06133 528 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 IMPDH2P12268 514 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CCDC130P13994 396 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ARF4P18085 180 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 DGKAP23743 735 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 NDUFS1P28331 727 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CXCR5P32302 372 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 FLT3P36888 993 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SLCO1A2P46721 670 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 TM4SF4P48230 202 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RABGGTBP53611 331 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC16A1P53985 500 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RPS15P62841 145 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ALDH6A1Q02252 535 aaKnown RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 RBPJQ06330 500 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 HSPA14Q0VDF9 509 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF211Q13398 564 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 AP5B1Q2VPB7 878 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 PPP1R15BQ5SWA1 713 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 HIBCHQ6NVY1 386 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 CRTC3Q6UUV7 619 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 DNAJB7Q7Z6W7 309 aaPredicted RBP2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SRLQ86TD4 932 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 KBTBD6Q86V97 674 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SIRT2Q8IXJ6 389 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 ADGRG2Q8IZP9 1017 aa2.98□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC35F6Q8N357 371 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms