RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GHRHRQ02643 423 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 RPS27LQ71UM5 84 aaKnown RBP14.78□□□□□ -0.04
VPS35-210ENST00000568784 IFNEQ86WN2 208 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 APBB2Q92870 758 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 QKIQ96PU8 341 aaKnown RBP eCLIP14.78□□□□□ -0.046e-6■■■■□ 20.5
VPS35-210ENST00000568784 DCUN1D5Q9BTE7 237 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 C1orf21Q9H246 121 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 ZNF711Q9Y462 761 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 SNX10Q9Y5X0 201 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 ATP6AP2A0A1C7CYW4 349 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 ATP6AP2O75787 350 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 CRTAMO95727 393 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 HNRNPCP07910 306 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS35-210ENST00000568784 FAM58BPP0C7Q3 252 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 ATICP31939 592 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 CASP2P42575 452 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 RPL5P46777 297 aaKnown RBP14.78□□□□□ -0.04
VPS35-210ENST00000568784 ITKQ08881 620 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 GRM1Q13255 1194 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 GK5Q6ZS86 529 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 EDEM1Q92611 657 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 VPS39Q96JC1 886 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PCDHAC1Q9H158 963 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PDZD7Q9H5P4 517 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 V9GYQ6 96 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 SUPT3HO75486 399 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 PSMC3P17980 439 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ME2P23368 584 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 GALK1P51570 392 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 SLC41A1Q8IVJ1 513 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 BEST2Q8NFU1 509 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ACMSDQ8TDX5 336 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 PHF21BQ96EK2 531 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 IFT43Q96FT9 208 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 CPNE1Q99829 537 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ASB7Q9H672 318 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ERAP1Q9NZ08 941 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 MOCS1Q9NZB8 636 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 SF3B1O75533 1304 aaKnown RBP eCLIP14.77□□□□□ -0.04
VPS35-210ENST00000568784 AKAP10O43572 662 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 NDUFV1P49821 464 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 SEMA5AQ13591 1074 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 PNPLA1Q8N8W4 532 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ACVR1CQ8NER5 493 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ATP6V1E2Q96A05 226 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 ELMO2Q96JJ3 720 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 FCRL3Q96P31 734 aaPredicted RBP14.77□□□□□ -0.04
VPS35-210ENST00000568784 EFCAB1Q9HAE3 211 aa14.77□□□□□ -0.04
VPS35-210ENST00000568784 TIMM13Q9Y5L4 95 aaPredicted RBP14.77□□□□□ -0.04
VPS35-210ENST00000568784 VAPBO95292 243 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 ETFBP38117 255 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 PCSK7Q16549 785 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 AGKQ53H12 422 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 DALRD3Q5D0E6 543 aaKnown RBP14.77□□□□□ -0.05
VPS35-210ENST00000568784 FAM43BQ6ZT52 329 aaPredicted RBP14.77□□□□□ -0.05
VPS35-210ENST00000568784 EXOC8Q8IYI6 725 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 MYO1HQ8N1T3 1032 aa14.77□□□□□ -0.05
VPS35-210ENST00000568784 DGCR14Q96DF8 476 aaKnown RBP14.77□□□□□ -0.05
VPS35-210ENST00000568784 ARHGEF37A1IGU5 675 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RGSL1A5PLK6 1076 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 NEMP2A6NFY4 417 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 PMPCBO75439 489 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 MCF2P10911 925 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 HDCP19113 662 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 NR2C2P49116 596 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RPL14P50914 215 aaKnown RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 MAPK10P53779 464 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 TTLL4Q14679 1199 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 CCDC153Q494R4 210 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ZNF618Q5T7W0 954 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 GRTP1Q5TC63 336 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 LRRC8BQ6P9F7 803 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 C4orf22Q6V702 233 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ATG14Q6ZNE5 492 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PDZD4Q76G19 769 aaPredicted RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 PDCD6IPQ8WUM4 868 aaKnown RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 AFG1LQ8WV93 481 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 DNAJC28Q9NX36 388 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 ARHGAP10A1A4S6 786 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 SAC3D1A6NKF1 404 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 C9JVG2 144 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 MDM4O15151 490 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 HDAC3O15379 428 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PFKMP08237 780 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 TFEBP19484 476 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 MAP3K10Q02779 954 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 GRM3Q14832 879 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 KIF19Q2TAC6 998 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PITRM1Q5JRX3 1037 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 CELF3Q5SZQ8 465 aaKnown RBP14.76□□□□□ -0.05
VPS35-210ENST00000568784 B3GNT6Q6ZMB0 384 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PIGZQ86VD9 579 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 RNF169Q8NCN4 708 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PKP2Q99959 881 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 TRPC7Q9HCX4 862 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 DDIT4Q9NX09 232 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 MORF4L1Q9UBU8 362 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 STAP1Q9ULZ2 295 aa14.76□□□□□ -0.05
VPS35-210ENST00000568784 PCDHB12Q9Y5F1 795 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms