RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 EOGTQ5NDL2 527 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 RFX8Q6ZV50 586 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 POLNQ7Z5Q5 900 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 RTL3Q8N8U3 475 aaKnown RBP20.05■□□□□ 0.8
CLN3-225ENST00000566824 TPCN2Q8NHX9 752 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 CCDC26Q8TAB7 109 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 TSC1Q92574 1164 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 KLC2Q9H0B6 622 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 SLC6A17Q9H1V8 727 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 ETNK2Q9NVF9 386 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 FBXO4Q9UKT5 387 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 ACTL7AQ9Y615 435 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 ADGRG1Q9Y653 693 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 WASH4PA8MWX3 477 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 TTC34A8MYJ7 566 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 IPO7O95373 1038 aaKnown RBP20.04■□□□□ 0.8
CLN3-225ENST00000566824 MT-CO1P00395 513 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 MAPKAPK2P49137 400 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 ECT2LQ008S8 904 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 HSF5Q4G112 596 aaPredicted RBP20.04■□□□□ 0.8
CLN3-225ENST00000566824 C6orf118Q5T5N4 469 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 KIAA1328Q86T90 577 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 TP53INP2Q8IXH6 220 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 FAM71BQ8TC56 605 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 NELL1Q92832 810 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 SPON2Q9BUD6 331 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 LUC7LQ9NQ29 371 aaKnown RBP20.04■□□□□ 0.8
CLN3-225ENST00000566824 FAM86C1Q9NVL1 165 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 VPS51Q9UID3 782 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 ALG6Q9Y672 507 aa20.04■□□□□ 0.8
CLN3-225ENST00000566824 K7ERQ8 282 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 ZMPSTE24O75844 475 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 MOCS3O95396 460 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 ATP5BP06576 529 aaKnown RBP20.03■□□□□ 0.8
CLN3-225ENST00000566824 TNNT1P13805 278 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 VAV1P15498 845 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 ERCC2P18074 760 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 AMPD1P23109 780 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 CDH6P55285 790 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 OXCT1P55809 520 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 KRT83P78385 493 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 HADHQ16836 314 aaKnown RBP20.03■□□□□ 0.8
CLN3-225ENST00000566824 SERPINA13PQ6UXR4 307 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 LINGO4Q6UY18 593 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 TRMT11Q7Z4G4 463 aaKnown RBP20.03■□□□□ 0.8
CLN3-225ENST00000566824 NPWQ8N729 165 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 RAPGEF5Q92565 580 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 ARHGEF2Q92974 986 aaKnown RBP20.03■□□□□ 0.8
CLN3-225ENST00000566824 CELF6Q96J87 481 aaKnown RBP20.03■□□□□ 0.8
CLN3-225ENST00000566824 PDLIM2Q96JY6 352 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 CSPG4P5Q96PW8 444 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 PLA2G4CQ9UP65 541 aa20.03■□□□□ 0.8
CLN3-225ENST00000566824 TCRBV21S2A2A0A5A6 115 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 BTNL10A8MVZ5 291 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 FGF10O15520 208 aaPredicted RBP20.02■□□□□ 0.8
CLN3-225ENST00000566824 ARHGAP6O43182 974 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 ASLP04424 464 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 EPHX1P07099 455 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 MARCKSL1P49006 195 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 HCAR3P49019 387 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 DGKEP52429 567 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 DPYSL3Q14195 570 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 ANO7Q6IWH7 933 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 LEKR1Q6ZMV7 388 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 CCDC112Q8NEF3 446 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 MDGA1Q8NFP4 955 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 TSTD1Q8NFU3 115 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 ZNF830Q96NB3 372 aaPredicted RBP20.02■□□□□ 0.8
CLN3-225ENST00000566824 ACE2Q9BYF1 805 aaPredicted RBP20.02■□□□□ 0.8
CLN3-225ENST00000566824 LCMT1Q9UIC8 334 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 R4GN57 208 aa20.02■□□□□ 0.8
CLN3-225ENST00000566824 CBX4O00257 560 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 DCLK1O15075 740 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 DAPK3O43293 454 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 SMAD6O43541 496 aaKnown RBP20.02■□□□□ 0.79
CLN3-225ENST00000566824 CD160O95971 181 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 GABRG2P18507 467 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 HTR7P34969 479 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 ARF5P84085 180 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 SRSF5Q13243 272 aaKnown RBP20.02■□□□□ 0.79
CLN3-225ENST00000566824 KRT81Q14533 505 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 ZNF528Q3MIS6 628 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 SDE2Q6IQ49 451 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 ZNF783Q6ZMS7 281 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 ARHGAP12Q8IWW6 846 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 UMODL1-AS1Q8N2C9 162 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 DCAF4L2Q8NA75 395 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 FRS2Q8WU20 508 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 HMGB4Q8WW32 186 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 HMCESQ96FZ2 354 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 TPSD1Q9BZJ3 242 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 KCNF1Q9H3M0 494 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 LRRC19Q9H756 370 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 CATSPERBQ9H7T0 1116 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 ATP13A1Q9HD20 1204 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 HCN4Q9Y3Q4 1203 aa20.02■□□□□ 0.79
CLN3-225ENST00000566824 MACROD2A1Z1Q3 448 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 GRID2IPA4D2P6 1211 aa20.01■□□□□ 0.79
CLN3-225ENST00000566824 C3orf70A6NLC5 250 aaPredicted RBP20.01■□□□□ 0.79
CLN3-225ENST00000566824 RASA4BC9J798 803 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms