RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C11orf70Q9BRQ4 267 aa21.31■■□□□ 1
CLN3-219ENST00000565778 OR51B4Q9Y5P0 310 aa21.31■■□□□ 1
CLN3-219ENST00000565778 ADAMTS9Q9P2N4 1935 aa21.3■■□□□ 1
CLN3-219ENST00000565778 DRGXA6NNA5 263 aa21.3■■□□□ 1
CLN3-219ENST00000565778 GALCP54803 685 aa21.3■■□□□ 1
CLN3-219ENST00000565778 KRT83P78385 493 aa21.3■■□□□ 1
CLN3-219ENST00000565778 SLC14A1Q13336 389 aa21.3■■□□□ 1
CLN3-219ENST00000565778 ELAVL3Q14576 367 aaKnown RBP21.3■■□□□ 1
CLN3-219ENST00000565778 DLG2Q15700 870 aa21.3■■□□□ 1
CLN3-219ENST00000565778 ANO6Q4KMQ2 910 aa21.3■■□□□ 1
CLN3-219ENST00000565778 PIP4P1Q86T03 277 aa21.3■■□□□ 1
CLN3-219ENST00000565778 FAM131BQ86XD5 332 aa21.3■■□□□ 1
CLN3-219ENST00000565778 C1orf216Q8TAB5 229 aa21.3■■□□□ 1
CLN3-219ENST00000565778 FRS2Q8WU20 508 aa21.3■■□□□ 1
CLN3-219ENST00000565778 RXFP2Q8WXD0 754 aa21.3■■□□□ 1
CLN3-219ENST00000565778 PCDHB18PQ96TA0 734 aa21.3■■□□□ 1
CLN3-219ENST00000565778 HSD3B7Q9H2F3 369 aa21.3■■□□□ 1
CLN3-219ENST00000565778 SEPT11Q9NVA2 429 aaKnown RBP21.3■■□□□ 1
CLN3-219ENST00000565778 MPP6Q9NZW5 540 aa21.3■■□□□ 1
CLN3-219ENST00000565778 SERGEFQ9UGK8 458 aa21.3■■□□□ 1
CLN3-219ENST00000565778 CNOT1A5YKK6 2376 aaKnown RBP21.29■■□□□ 1
CLN3-219ENST00000565778 LRRC72A6NJI9 287 aa21.29■■□□□ 1
CLN3-219ENST00000565778 SMTNL1A8MU46 457 aa21.29■■□□□ 1
CLN3-219ENST00000565778 E9PAM4 449 aa21.29■■□□□ 1
CLN3-219ENST00000565778 ADH1BP00325 375 aa21.29■■□□□ 1
CLN3-219ENST00000565778 UNGP13051 313 aaPredicted RBP21.29■■□□□ 1
CLN3-219ENST00000565778 ATP1A3P13637 1013 aa21.29■■□□□ 1
CLN3-219ENST00000565778 CD59P13987 128 aa21.29■■□□□ 1
CLN3-219ENST00000565778 C5AR1P21730 350 aa21.29■■□□□ 1
CLN3-219ENST00000565778 CD27P26842 260 aa21.29■■□□□ 1
CLN3-219ENST00000565778 OR1E1P30953 314 aa21.29■■□□□ 1
CLN3-219ENST00000565778 NSFP46459 744 aaKnown RBP21.29■■□□□ 1
CLN3-219ENST00000565778 VASPP50552 380 aaPredicted RBP21.29■■□□□ 1
CLN3-219ENST00000565778 AFF3P51826 1226 aaKnown RBP21.29■■□□□ 1
CLN3-219ENST00000565778 TEAD4Q15561 434 aa21.29■■□□□ 1
CLN3-219ENST00000565778 KIAA0895LQ68EN5 471 aa21.29■■□□□ 1
CLN3-219ENST00000565778 IL27RAQ6UWB1 636 aa21.29■■□□□ 1
CLN3-219ENST00000565778 ZNF683Q8IZ20 524 aa21.29■■□□□ 1
CLN3-219ENST00000565778 GAREM1Q9H706 876 aa21.29■■□□□ 1
CLN3-219ENST00000565778 ADAM22Q9P0K1 906 aa21.29■■□□□ 1
CLN3-219ENST00000565778 A0A1B0GVT2 93 aa21.28■■□□□ 1
CLN3-219ENST00000565778 ATP9BO43861 1147 aa21.28■■□□□ 1
CLN3-219ENST00000565778 BNIP3LO60238 219 aa21.28■■□□□ 1
CLN3-219ENST00000565778 ENDOD1O94919 500 aa21.28■■□□□ 1
CLN3-219ENST00000565778 KRT3P12035 628 aa21.28■■□□□ 1
CLN3-219ENST00000565778 GOT1P17174 413 aa21.28■■□□□ 1
CLN3-219ENST00000565778 SDC4P31431 198 aa21.28■■□□□ 1
CLN3-219ENST00000565778 FOXC1Q12948 553 aa21.28■■□□□ 1
CLN3-219ENST00000565778 CDO1Q16878 200 aa21.28■■□□□ 1
CLN3-219ENST00000565778 C15orf59Q2T9L4 293 aaPredicted RBP21.28■■□□□ 1
CLN3-219ENST00000565778 CCDC14Q49A88 953 aa21.28■■□□□ 1
CLN3-219ENST00000565778 CAVIN1Q6NZI2 390 aaKnown RBP21.28■■□□□ 1
CLN3-219ENST00000565778 NCEH1Q6PIU2 408 aa21.28■■□□□ 1
CLN3-219ENST00000565778 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.28■■□□□ 1
CLN3-219ENST00000565778 APTXQ7Z2E3 356 aaKnown RBP21.28■■□□□ 1
CLN3-219ENST00000565778 BNIPLQ7Z465 357 aa21.28■■□□□ 1
CLN3-219ENST00000565778 TFAP2DQ7Z6R9 452 aa21.28■■□□□ 1
CLN3-219ENST00000565778 DSG4Q86SJ6 1040 aa21.28■■□□□ 1
CLN3-219ENST00000565778 SETD3Q86TU7 594 aaPredicted RBP21.28■■□□□ 1
CLN3-219ENST00000565778 OR14C36Q8NHC7 312 aa21.28■■□□□ 1
CLN3-219ENST00000565778 JOSD2Q8TAC2 188 aa21.28■■□□□ 1
CLN3-219ENST00000565778 OR8D1Q8WZ84 308 aa21.28■■□□□ 1
CLN3-219ENST00000565778 C2orf49Q9BVC5 232 aaPredicted RBP21.28■■□□□ 1
CLN3-219ENST00000565778 TM9SF3Q9HD45 589 aa21.28■■□□□ 1
CLN3-219ENST00000565778 ADAMTS1Q9UHI8 967 aa21.28■■□□□ 1
CLN3-219ENST00000565778 FZD4Q9ULV1 537 aa21.28■■□□□ 1
CLN3-219ENST00000565778 SLCO1B1Q9Y6L6 691 aa21.28■■□□□ 1
CLN3-219ENST00000565778 SPAARA0A1B0GVQ0 90 aa21.27■■□□□ 1
CLN3-219ENST00000565778 SH3BP5O60239 455 aa21.27■■□□□ 1
CLN3-219ENST00000565778 GJB3O75712 270 aa21.27■■□□□ 1
CLN3-219ENST00000565778 GJB6O95452 261 aa21.27■■□□□ 1
CLN3-219ENST00000565778 CER1O95813 267 aa21.27■■□□□ 1
CLN3-219ENST00000565778 CCDC172P0C7W6 258 aa21.27■■□□□ 1
CLN3-219ENST00000565778 SIM1P81133 766 aaPredicted RBP21.27■■□□□ 1
CLN3-219ENST00000565778 BNC1Q01954 994 aa21.27■■□□□ 1
CLN3-219ENST00000565778 CLEC16AQ2KHT3 1053 aa21.27■■□□□ 1
CLN3-219ENST00000565778 HLA-BQ31612 363 aa21.27■■□□□ 1
CLN3-219ENST00000565778 ARL13BQ3SXY8 428 aa21.27■■□□□ 1
CLN3-219ENST00000565778 C6orf118Q5T5N4 469 aa21.27■■□□□ 1
CLN3-219ENST00000565778 FAM46CQ5VWP2 391 aa21.27■■□□□ 1
CLN3-219ENST00000565778 SH2D3CQ8N5H7 860 aa21.27■■□□□ 1
CLN3-219ENST00000565778 AADATQ8N5Z0 425 aa21.27■■□□□ 1
CLN3-219ENST00000565778 ATP11CQ8NB49 1132 aa21.27■■□□□ 1
CLN3-219ENST00000565778 OR2T34Q8NGX1 318 aa21.27■■□□□ 1
CLN3-219ENST00000565778 AGPAT1Q99943 283 aa21.27■■□□□ 1
CLN3-219ENST00000565778 SPON2Q9BUD6 331 aa21.27■■□□□ 1
CLN3-219ENST00000565778 SELENOOQ9BVL4 669 aa21.27■■□□□ 1
CLN3-219ENST00000565778 IL21RQ9HBE5 538 aa21.27■■□□□ 1
CLN3-219ENST00000565778 OSGEPQ9NPF4 335 aa21.27■■□□□ 1
CLN3-219ENST00000565778 FARP1Q9Y4F1 1045 aaPredicted RBP21.27■■□□□ 1
CLN3-219ENST00000565778 PCDHB9Q9Y5E1 797 aa21.27■■□□□ 1
CLN3-219ENST00000565778 IGLV3-10A0A075B6K4 115 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3DA0A087WVF3 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3IA0A087WXS9 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3EA0A087X179 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3KA0A087X1G2 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 A0A0D9SEW6 157 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3FA6NER0 549 aaPredicted RBP21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3LB9A6J9 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TEX33O43247 280 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms