RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 C7orf72A4D263 438 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 NOTOA8MTQ0 251 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 HBP1O60381 514 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 MGEA5O60502 916 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 CST3P01034 146 aaPredicted RBP13.58□□□□□ -0.24
CLK3-206ENST00000562078 KRT10P13645 584 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 PTPN1P18031 435 aaKnown RBP13.58□□□□□ -0.24
CLK3-206ENST00000562078 GNA12Q03113 381 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 SLC18A2Q05940 514 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 TRIM16LQ309B1 348 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 ATF7IP2Q5U623 682 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 TRIM72Q6ZMU5 477 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 SETD3Q86TU7 594 aaPredicted RBP13.58□□□□□ -0.24
CLK3-206ENST00000562078 THNSL1Q8IYQ7 743 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 CADM3Q8N126 398 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 FBXO36Q8NEA4 188 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 PPP1R16BQ96T49 567 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 C11orf70Q9BRQ4 267 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 RPF2Q9H7B2 306 aaKnown RBP13.58□□□□□ -0.24
CLK3-206ENST00000562078 MINDY3Q9H8M7 445 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 IFT122Q9HBG6 1241 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 VPS45Q9NRW7 570 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 OLAHQ9NV23 265 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 ITGA11Q9UKX5 1188 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 MYRFQ9Y2G1 1151 aa13.58□□□□□ -0.24
CLK3-206ENST00000562078 TRIM64CA6NLI5 447 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 COPEO14579 308 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 LIASO43766 372 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 ALDH1A1P00352 501 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 ASS1P00966 412 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 IFNB1P01574 187 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 MYL6P60660 151 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 NOMO3P69849 1222 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 TFAMQ00059 246 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 LAMC2Q13753 1193 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 TIGD2Q4W5G0 525 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 PPP6R3Q5H9R7 873 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 ANKRD22Q5VYY1 191 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 EEF1DP3Q658K8 133 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 ATG16L1Q676U5 607 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 MPZL3Q6UWV2 235 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 MON1BQ7L1V2 547 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 RSPH3Q86UC2 560 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 CATSPER1Q8NEC5 780 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 EFHD2Q96C19 240 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 CAPNS2Q96L46 248 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 KATNBL1Q9H079 304 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 KLHL25Q9H0H3 589 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 AVENQ9NQS1 362 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 ERAP1Q9NZ08 941 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 FETUBQ9UGM5 382 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 CPSF3Q9UKF6 684 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 ERVK-11Q9UQG0 969 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 CROCCQ5TZA2 2017 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 CFAP99D6REC4 459 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 H3BMQ9 156 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 GIPC1O14908 333 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 FAM155BO75949 473 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 C22orf31O95567 290 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 ESRRBO95718 433 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 LGALS2P05162 132 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 ZNF286BP0CG31 522 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 MYCLP1P12525 358 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 PTPN2P17706 415 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 HSPA13P48723 471 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 TUFMP49411 452 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 AARS2Q5JTZ9 985 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 SCARA5Q6ZMJ2 495 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 LYSMD3Q7Z3D4 306 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 Q8N9G6 341 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 RMND5BQ96G75 393 aaPredicted RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 COG8Q96MW5 612 aa13.57□□□□□ -0.24
CLK3-206ENST00000562078 MRPL46Q9H2W6 279 aaKnown RBP13.57□□□□□ -0.24
CLK3-206ENST00000562078 ARHGEF37A1IGU5 675 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 KLHL41O60662 606 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 PROZP22891 400 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 JAK1P23458 1154 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 OTUD4Q01804 1114 aaKnown RBP13.56□□□□□ -0.24
CLK3-206ENST00000562078 MBTD1Q05BQ5 628 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 LRP8Q14114 963 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 NUDCD3Q8IVD9 361 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 TRPC4APQ8TEL6 797 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 KBTBD7Q8WVZ9 684 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 SOCS4Q8WXH5 440 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 HERC2P3Q9BVR0 1158 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 SLC13A1Q9BZW2 595 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 CNTN6Q9UQ52 1028 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 PCDHGA3Q9Y5H0 932 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 IQANK1A0A1B0GTG1 560 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 PI4K2BG5E9Z4 385 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 PLOD2O00469 737 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 ACKR2O00590 384 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 LYPLA1O75608 230 aaPredicted RBP13.56□□□□□ -0.24
CLK3-206ENST00000562078 APOEP02649 317 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 HOXC6P09630 235 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 IQCF3P0C7M6 154 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 INSRRP14616 1297 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 AP3M2P53677 418 aa13.56□□□□□ -0.24
CLK3-206ENST00000562078 TAS2R40P59535 323 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms