RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CRY2Q49AN0 593 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SLC9C1Q4G0N8 1177 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CFAP221Q4G0U5 840 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCDC40Q4G0X9 1142 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CEP78Q5JTW2 689 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 FAM83BQ5T0W9 1011 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 GPATCH4Q5T3I0 446 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 CFAP58Q5T655 872 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SOGA3Q5TF21 947 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCDC181Q5TID7 509 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 AGBL2Q5U5Z8 902 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SFMBT2Q5VUG0 894 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 KRT79Q5XKE5 535 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SLC2A7Q6PXP3 512 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 C6orf89Q6UWU4 347 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 B4GALNT4Q76KP1 1039 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 RRAGAQ7L523 313 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 EPM2AIP1Q7L775 607 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 ARMC9Q7Z3E5 817 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CACNA2D4Q7Z3S7 1137 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CLNKQ7Z7G1 428 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCDC65Q8IXS2 484 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 IFT20Q8IY31 132 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZNF444Q8N0Y2 327 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 ARFGAP2Q8N6H7 521 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 GPR156Q8NFN8 814 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 MYCBPAPQ8TBZ2 947 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 GRAPLQ8TC17 118 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 BCAS4Q8TDM0 211 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ATP8B4Q8TF62 1192 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ZNF473Q8WTR7 871 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 SCFD2Q8WU76 684 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TGFBRAP1Q8WUH2 860 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 STON2Q8WXE9 905 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 P3H4Q92791 437 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 HPS3Q969F9 1004 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TLCD1Q96CP7 247 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CDK5RAP3Q96JB5 506 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PBKQ96KB5 322 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CABS1Q96KC9 395 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 MARK4Q96L34 752 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 RNPC3Q96LT9 517 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 DRC1Q96MC2 740 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 CCDC43Q96MW1 224 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 GDAP1L1Q96MZ0 367 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PIGSQ96S52 555 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 EYA3Q99504 573 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PLIN2Q99541 437 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SH2D3AQ9BRG2 576 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ORAI3Q9BRQ5 295 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SYT11Q9BT88 431 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 FGFBP2Q9BYJ0 223 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TXLNGYQ9BZA5 131 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ISCUQ9H1K1 167 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PLEKHA4Q9H4M7 779 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TAF1DQ9H5J8 278 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 VCPKMTQ9H867 229 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TMBIM4Q9HC24 238 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 EPB41L5Q9HCM4 733 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SIX2Q9NPC8 291 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TMEM260Q9NX78 707 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TFCP2L1Q9NZI6 479 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SUCLA2Q9P2R7 463 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 HSFX1Q9UBD0 423 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 SWAP70Q9UH65 585 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 FAM153AQ9UHL3 310 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TTC7AQ9ULT0 858 aaPredicted RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 STX8Q9UNK0 236 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TRAF3IP3Q9Y228 551 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 STXBP5LQ9Y2K9 1186 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 NOC2LQ9Y3T9 749 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 DAAM1Q9Y4D1 1078 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 PPP2R3BQ9Y5P8 575 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 NFS1Q9Y697 457 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 BZW2Q9Y6E2 419 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 SSC5DA1L4H1 1573 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 A0A0G2JMZ2 1700 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 LRRC37A2A6NM11 1700 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 TNS1Q9HBL0 1735 aaKnown RBP2.64□□□□□ -1.99
SPG11-223ENST00000560858 DOCK1Q14185 1865 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 ASTN1O14525 1302 aa2.64□□□□□ -1.99
SPG11-223ENST00000560858 COL11A1P12107 1806 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 ANK1P16157 1881 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CYP3A7-CYP3A51PA0A087WV96 503 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PRAMEF33A0A0G2JMD5 474 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 A0A1W2PS29 197 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KCNU1A8MYU2 1149 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 F8VZ95 297 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 MYO1FO00160 1098 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PDXKO00764 312 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NDUFAB1O14561 156 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ZBTB5O15062 677 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TBX3O15119 743 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 EIF3DO15371 548 aaKnown RBP eCLIP2.63□□□□□ -1.99
SPG11-223ENST00000560858 TGM5O43548 720 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TRAPPC3O43617 180 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 BUB1O43683 1085 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PRAMEF10O60809 474 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 RASSF9O75901 435 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FLOT1O75955 427 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms