RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FEM1AQ9BSK4 669 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 FBRSL1Q9HCM7 1045 aaKnown RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 ZNF212Q9UDV6 495 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 DNAI1Q9UI46 699 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 PCDHA3Q9Y5H8 950 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP3-216ENST00000559873 MIA3Q5JRA6 1907 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 A0A0C4DFX4 3053 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 A0A0U1RQJ8 604 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 CHURC1-FNTBB4DL54 471 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 PRRT4C9JH25 899 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 K7EQS6 105 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 APOL1O14791 398 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 FTCDO95954 541 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 MX2P20592 715 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 CCR3P51677 355 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ARSEP51690 589 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 CLCN6P51797 869 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 NUBP1P53384 320 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ECT2LQ008S8 904 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 PPP2R5EQ16537 467 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 FNDC3BQ53EP0 1204 aaKnown RBP10.32□□□□□ -0.76
USP3-216ENST00000559873 HS1BP3Q53T59 392 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 C2orf27AQ580R0 203 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ANKRD20A8PQ5CZ79 823 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 SEL1L2Q5TEA6 688 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 SERPINA13PQ6UXR4 307 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 BZW1Q7L1Q6 419 aaKnown RBP10.32□□□□□ -0.76
USP3-216ENST00000559873 ADIPOR2Q86V24 386 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ZNF687Q8N1G0 1237 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 SPEM1Q8N4L4 309 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ATPAF2Q8N5M1 289 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 RPLP0P6Q8NHW5 317 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 USP33Q8TEY7 942 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 ATRIPQ8WXE1 791 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 RAPGEF5Q92565 580 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 EZH1Q92800 747 aaPredicted RBP10.32□□□□□ -0.76
USP3-216ENST00000559873 RNF25Q96BH1 459 aaPredicted RBP10.32□□□□□ -0.76
USP3-216ENST00000559873 LMLNQ96KR4 655 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 CCDC114Q96M63 670 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 SPON2Q9BUD6 331 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 MAGEB5Q9BZ81 275 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 RBM12Q9NTZ6 932 aaKnown RBP10.32□□□□□ -0.76
USP3-216ENST00000559873 RAD54BQ9Y620 910 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 DOCK4Q8N1I0 1966 aa10.32□□□□□ -0.76
USP3-216ENST00000559873 FAM86C2PA6NEL3 165 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 RASA4BC9J798 803 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 CBX4O00257 560 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 DCLK1O15075 740 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 RASA4O43374 803 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 KLF8O95600 359 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 DCNP07585 359 aaKnown RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 CD48P09326 243 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 HOXB2P14652 356 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 HNRNPLP14866 589 aaKnown RBP eCLIP10.31□□□□□ -0.763e-6■■■□□ 15.1
USP3-216ENST00000559873 AMPD1P23109 780 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 MZF1P28698 734 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 NTSR1P30989 418 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 TIE1P35590 1138 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 KIR2DL1P43626 348 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 MARCKSL1P49006 195 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 VASPP50552 380 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 SLC20A2Q08357 652 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 MESP2Q0VG99 397 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 RPS6KA1Q15418 735 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 ATP13A4Q4VNC1 1196 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 TFDP3Q5H9I0 405 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 CCDC181Q5TID7 509 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 EGFLAMQ63HQ2 1017 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 SPOCD1Q6ZMY3 1216 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 Q6ZS52 159 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 SYT13Q7L8C5 426 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 RFX6Q8HWS3 928 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 LRRC49Q8IUZ0 686 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 BBS5Q8N3I7 341 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 ALLCQ8N6M5 410 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 OR7D4Q8NG98 312 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 NSMCE1Q8WV22 266 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 CASKIN2Q8WXE0 1202 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 KRT35Q92764 455 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 ARHGEF2Q92974 986 aaKnown RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 HES6Q96HZ4 224 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 RNF157Q96PX1 679 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 FBRSQ9HAH7 460 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 SP110Q9HB58 689 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 POLMQ9NP87 494 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 NDFIP2Q9NV92 336 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 HAUS2Q9NVX0 235 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 SPATA6Q9NWH7 488 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 TRMT1Q9NXH9 659 aaKnown RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 THAP10Q9P2Z0 257 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 VPS51Q9UID3 782 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 INTS6Q9UL03 887 aaKnown RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 MMP17Q9ULZ9 603 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 ERVW-1Q9UQF0 538 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 HS3ST2Q9Y278 367 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 MTF2Q9Y483 593 aaPredicted RBP10.31□□□□□ -0.76
USP3-216ENST00000559873 OR51B4Q9Y5P0 310 aa10.31□□□□□ -0.76
USP3-216ENST00000559873 A0A0D9SEW6 157 aa10.3□□□□□ -0.76
USP3-216ENST00000559873 DFFAO00273 331 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms