RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SERPINB5P36952 375 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 BEX3Q00994 111 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ARHGAP36Q6ZRI8 547 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 GPR142Q7Z601 462 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SHCBP1Q8NEM2 672 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SPATA22Q8NHS9 363 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SLC10A4Q96EP9 437 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ZNF419Q96HQ0 510 aaPredicted RBP13.17□□□□□ -0.3
LDLR-207ENST00000558013 TUBGCP5Q96RT8 1024 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 PAAF1Q9BRP4 392 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 DDIT4Q9NX09 232 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 SLC39A10Q9ULF5 831 aa13.17□□□□□ -0.3
LDLR-207ENST00000558013 ZSWIM8A7E2V4 1837 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 BUD23O43709 281 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 DAB1O75553 588 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 JUNP05412 331 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 ITGAXP20702 1163 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 MPSTP25325 297 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 ATXN3P54252 364 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 AP2B1P63010 937 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 PAFAH1B3Q15102 231 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 TMEM198Q66K66 360 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.16□□□□□ -0.3
LDLR-207ENST00000558013 ZNF483Q8TF39 744 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 MARK4Q96L34 752 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 ECSITQ9BQ95 431 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 FAM124BQ9H5Z6 455 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 C20orf96Q9NUD7 363 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 CDH22Q9UJ99 828 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 PPP1R12AO14974 1030 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 RNASEH1O60930 286 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 HSPA4LO95757 839 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 JCHAINP01591 159 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 ARSAP15289 507 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 EPHA3P29320 983 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 HARS2P49590 506 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 PAN2Q504Q3 1202 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 SFT2D3Q587I9 215 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 C6orf163Q5TEZ5 329 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 PSTKQ8IV42 348 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 ZMIZ2Q8NF64 920 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 TNIP3Q96KP6 325 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 LENG8Q96PV6 779 aaPredicted RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 APBA2Q99767 749 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 CPNE1Q99829 537 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 SMOQ99835 787 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 TINF2Q9BSI4 451 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 C1orf21Q9H246 121 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 S100A14Q9HCY8 104 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 EIF2B3Q9NR50 452 aaKnown RBP13.16□□□□□ -0.3
LDLR-207ENST00000558013 IGSF9Q9P2J2 1179 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 ANGPTL2Q9UKU9 493 aa13.16□□□□□ -0.3
LDLR-207ENST00000558013 AP2A1O95782 977 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 CD4P01730 458 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 PEX2P28328 305 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 TPI1P60174 286 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 ASPHQ12797 758 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 STXBP5Q5T5C0 1151 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 SMYD5Q6GMV2 418 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 BNIPLQ7Z465 357 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 TMEM135Q86UB9 458 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 RNF148Q8N7C7 305 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 OR6Y1Q8NGX8 325 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 URGCPQ8TCY9 931 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 LPPQ93052 612 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 GATA5Q9BWX5 397 aaPredicted RBP13.15□□□□□ -0.3
LDLR-207ENST00000558013 DDX43Q9NXZ2 648 aaKnown RBP13.15□□□□□ -0.3
LDLR-207ENST00000558013 SCOCQ9UIL1 159 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 SHROOM3Q8TF72 1996 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 NRCAMQ92823 1304 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 MT-CYBP00156 380 aaPredicted RBP13.15□□□□□ -0.3
LDLR-207ENST00000558013 SRGAP2BP0DMP2 458 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 LIMK2P53671 638 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 GRM3Q14832 879 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 TWF2Q6IBS0 349 aaKnown RBP13.15□□□□□ -0.3
LDLR-207ENST00000558013 C3orf58Q8NDZ4 430 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 PCED1BQ96HM7 432 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 LRRC40Q9H9A6 602 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 BFARQ9NZS9 450 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 POMPQ9Y244 141 aa13.15□□□□□ -0.3
LDLR-207ENST00000558013 AIM2O14862 343 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 AP1G2O75843 785 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 TOMM70O94826 608 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 KLHL2O95198 593 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 SBK3P0C264 359 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 MX2P20592 715 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 GRK2P25098 689 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 SCNN1AP37088 669 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 NUMBP49757 651 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 CCNA1P78396 465 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 DSG1Q02413 1049 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 CDK18Q07002 472 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 LBRQ14739 615 aaKnown RBP13.15□□□□□ -0.31
LDLR-207ENST00000558013 GRTP1Q5TC63 336 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 ZNF280DQ6N043 979 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 LIMS2Q7Z4I7 341 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 KCNMB4Q86W47 210 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 IFT43Q96FT9 208 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 ZNF560Q96MR9 790 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 SLC2A13Q96QE2 648 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms