RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 IQCF2Q8IXL9 164 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 AHI1Q8N157 1196 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 METTL25Q8N6Q8 603 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 RAB3IL1Q8TBN0 382 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 GCNAQ96QF7 691 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 SRPK1Q96SB4 655 aaKnown RBP12.53□□□□□ -0.4
SHMT2-207ENST00000553837 AP4E1Q9UPM8 1137 aa12.53□□□□□ -0.4
SHMT2-207ENST00000553837 PIN4Q9Y237 131 aaKnown RBP12.53□□□□□ -0.4
SHMT2-207ENST00000553837 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-207ENST00000553837 SMIM35A0A1B0GVV1 85 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 GLTPD2A6NH11 291 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 SLC15A5A6NIM6 579 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 F5H423 210 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-207ENST00000553837 BEST1O76090 585 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 RAG1P15918 1043 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 PORP16435 677 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-207ENST00000553837 ALDH1A3P47895 512 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 RABGGTBP53611 331 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 COG7P83436 770 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 WASHC5Q12768 1159 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 SNX17Q15036 470 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 MAP7D1Q3KQU3 841 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 OTUD1Q5VV17 481 aaPredicted RBP12.52□□□□□ -0.4
SHMT2-207ENST00000553837 KCNT2Q6UVM3 1135 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 LIMS2Q7Z4I7 341 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 FNDC8Q8TC99 324 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 CSPG4P5Q96PW8 444 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 SIKE1Q9BRV8 207 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 ZNF696Q9H7X3 374 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 PNPLA8Q9NP80 782 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 CACNG4Q9UBN1 327 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 RAB26Q9ULW5 256 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 UBQLN1Q9UMX0 589 aaKnown RBP12.52□□□□□ -0.4
SHMT2-207ENST00000553837 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 USP3Q9Y6I4 520 aa12.52□□□□□ -0.4
SHMT2-207ENST00000553837 ZNF638Q14966 1978 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 NRCAMQ92823 1304 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 TRIM43BA6NCK2 446 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 SDR42E2A6NKP2 422 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 CLDN5O00501 218 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 KITP10721 976 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 GOT1P17174 413 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 MAGEA3P43357 314 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 BCAT1P54687 386 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 EPHB1P54762 984 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 NR1H2P55055 460 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 MTTPP55157 894 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 UBAP2LQ14157 1087 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 SPIDRQ14159 915 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 RABGAP1LQ5R372 815 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 NCBP2-AS2Q69YL0 99 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 THOC7Q6I9Y2 204 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 TRMT10BQ6PF06 316 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 KLHL35Q6PF15 583 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 TRIM67Q6ZTA4 783 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 ZDHHC17Q8IUH5 632 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 PPM1NQ8N819 430 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 SMG8Q8ND04 991 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 ACTRT2Q8TDY3 377 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 SIGLEC10Q96LC7 697 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 GRIP2Q9C0E4 1043 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 FAIMQ9NVQ4 179 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 DTLQ9NZJ0 730 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 C6orf203Q9P0P8 240 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 ZC3H7BQ9UGR2 993 aaKnown RBP12.52□□□□□ -0.41
SHMT2-207ENST00000553837 INPP5FQ9Y2H2 1132 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 PLLPQ9Y342 182 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 AK5Q9Y6K8 562 aa12.52□□□□□ -0.41
SHMT2-207ENST00000553837 HTR3EA5X5Y0 456 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 CAPN8A6NHC0 703 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 MEI4A8MW99 385 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 TRIM49D1C9J1S8 452 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 E9PBE3 544 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 DNAJA2O60884 412 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 CSH1P0DML2 217 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 CSH2P0DML3 217 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 NEK2P51955 445 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 COPAP53621 1224 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 BTKQ06187 659 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 MFSD10Q14728 455 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 CHI3L2Q15782 390 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 XKR4Q5GH76 650 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 TTC39BQ5VTQ0 682 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-207ENST00000553837 LRRC8BQ6P9F7 803 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 UNC5AQ6ZN44 842 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 FAM131BQ86XD5 332 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 NUDCD3Q8IVD9 361 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 BBS5Q8N3I7 341 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 SENP6Q9GZR1 1112 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-207ENST00000553837 KLC2Q9H0B6 622 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 GDAP2Q9NXN4 497 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 UBAP1Q9NZ09 502 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 SIRPGQ9P1W8 387 aa12.51□□□□□ -0.41
SHMT2-207ENST00000553837 HMX2A2RU54 273 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 GCATO75600 419 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ATP6V1B1P15313 513 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 PRKCHP24723 683 aa12.5□□□□□ -0.41
SHMT2-207ENST00000553837 ACAT1P24752 427 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 VARSP26640 1264 aaKnown RBP12.5□□□□□ -0.41
SHMT2-207ENST00000553837 SLC5A2P31639 672 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms