RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ZWILCHQ9H900 591 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 GRPEL1Q9HAV7 217 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 TMEM248Q9NWD8 314 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 DNAI1Q9UI46 699 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 SLCO3A1Q9UIG8 710 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 VPS28Q9UK41 221 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 PCDHA13Q9Y5I0 950 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 SHROOM3Q8TF72 1996 aa14.49□□□□□ -0.09
PTCH1-226ENST00000553011 ILVBLA1L0T0 632 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 EEF2KO00418 725 aaKnown RBP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 LILRB5O75023 590 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 MTA2O94776 668 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 ALDH1A2O94788 518 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 RARAP10276 462 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 GABRG2P18507 467 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 GLDCP23378 1020 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 NBL1P41271 181 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 SSR1P43307 286 aaKnown RBP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 TPI1P60174 286 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 ST8SIA6P61647 398 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 GNA12Q03113 381 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 MESDQ14696 234 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 STARD3Q14849 445 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 SPA17Q15506 151 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 PPP6R3Q5H9R7 873 aaPredicted RBP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 ZC3H14Q6PJT7 736 aaKnown RBP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 RHOT2Q8IXI1 618 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 PGBD3Q8N328 593 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 HSPH1Q92598 858 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 PPP1R9BQ96SB3 815 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 SLC6A17Q9H1V8 727 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 BCCIPQ9P287 314 aaKnown RBP eCLIP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 EBF1Q9UH73 591 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 VPS51Q9UID3 782 aa14.48□□□□□ -0.09
PTCH1-226ENST00000553011 REXO2Q9Y3B8 237 aaKnown RBP14.48□□□□□ -0.09
PTCH1-226ENST00000553011 CCDC163A0A0D9SF12 145 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 GOLGA6L3A6NEY3 463 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 TTC34A8MYJ7 566 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 GOLGA6L6A8MZA4 724 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 HRO43593 1189 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 SYNCRIPO60506 623 aaKnown RBP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 SRPRAP08240 638 aaKnown RBP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 GOT1P17174 413 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 NDUFV2P19404 249 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 GJC1P36383 396 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 MAPKAPK2P49137 400 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 TAS2R40P59535 323 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 SULT2A1Q06520 285 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 BOLA3Q53S33 107 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 ZNF783Q6ZMS7 281 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 PSTKQ8IV42 348 aaKnown RBP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 RTL3Q8N8U3 475 aaKnown RBP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 ACRBPQ8NEB7 543 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 SPON2Q9BUD6 331 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 NOL6Q9H6R4 1146 aaKnown RBP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.47□□□□□ -0.09
PTCH1-226ENST00000553011 INVSQ9Y283 1065 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 GVINP1Q7Z2Y8 2422 aa14.47□□□□□ -0.09
PTCH1-226ENST00000553011 RCCD1A6NED2 376 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 WASH4PA8MWX3 477 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 FGF10O15520 208 aaPredicted RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 MT-CO1P00395 513 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 MAN1A1P33908 653 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 HTR7P34969 479 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 ACVRL1P37023 503 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 CAMK2GQ13555 558 aaPredicted RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 TCEAL1Q15170 157 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 DPYSL2Q16555 572 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 HNRNPA1L2Q32P51 320 aaKnown RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 ATP13A4Q4VNC1 1196 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 LINGO4Q6UY18 593 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 RFX8Q6ZV50 586 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 CACUL1Q86Y37 369 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 DCAF4L2Q8NA75 395 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 KDM1BQ8NB78 822 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 TEKT4Q8WW24 435 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 RLN3Q8WXF3 142 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 MRGPRX1Q96LB2 322 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 C2orf49Q9BVC5 232 aaPredicted RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 MKRN2Q9H000 416 aaKnown RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 RETREG1Q9H6L5 497 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 CATSPERBQ9H7T0 1116 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 ATP13A1Q9HD20 1204 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 PRSS16Q9NQE7 514 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 CWC15Q9P013 229 aaKnown RBP14.46□□□□□ -0.09
PTCH1-226ENST00000553011 SLC25A13Q9UJS0 675 aa14.46□□□□□ -0.09
PTCH1-226ENST00000553011 PI4KAP42356 2102 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 CBX4O00257 560 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 DCLK1O15075 740 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 RAMP2O60895 175 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 SIN3BO75182 1162 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 RPP40O75818 363 aaKnown RBP14.45□□□□□ -0.1
PTCH1-226ENST00000553011 IPO7O95373 1038 aaKnown RBP14.45□□□□□ -0.1
PTCH1-226ENST00000553011 VAV1P15498 845 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 ERCC2P18074 760 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 NOP2P46087 812 aaKnown RBP14.45□□□□□ -0.1
PTCH1-226ENST00000553011 COPAP53621 1224 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 GSDMDP57764 484 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 KRT83P78385 493 aa14.45□□□□□ -0.1
PTCH1-226ENST00000553011 HADHQ16836 314 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms