RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GPRIN1Q7Z2K8 1008 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 B3GALNT2Q8NCR0 500 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 APPL2Q8NEU8 664 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SLC7A14Q8TBB6 771 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 LENG1Q96BZ8 264 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CDCA5Q96FF9 252 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 HSFY1Q96LI6 401 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 KCNK16Q96T55 309 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CPNE1Q99829 537 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 EIF2B3Q9NR50 452 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 TMEM30AQ9NV96 361 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 VANGL2Q9ULK5 521 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SORCS3Q9UPU3 1222 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PIN4Q9Y237 131 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MIA3Q5JRA6 1907 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 YJEFN3A6XGL0 299 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MEIS3P2A8K0S8 358 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 XPO1O14980 1071 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PHGDHO43175 533 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 AHCYL1O43865 530 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 FKBP6O75344 327 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DAB1O75553 588 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 TOMM70O94826 608 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 JUNP05412 331 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 C2P06681 752 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 COX4I1P13073 169 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 RAG1P15918 1043 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 NFKB1P19838 968 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MX2P20592 715 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 NMBRP28336 390 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SERPINB6P35237 376 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MAGEA12P43365 314 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PAPOLAP51003 745 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 TKTL1P51854 596 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ATXN3P54252 364 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DLG1Q12959 904 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 KLF10Q13118 480 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PPIL2Q13356 520 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF460Q14592 562 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PAFAH1B3Q15102 231 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ANKRD20A4Q4UJ75 823 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CFAP157Q5JU67 520 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SPANXN3Q5MJ09 141 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 GRTP1Q5TC63 336 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 NOTUMQ6P988 496 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 EPGNQ6UW88 154 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CLEC20AQ6ZU45 233 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF410Q86VK4 478 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PDSS2Q86YH6 399 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PSTKQ8IV42 348 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 URGCPQ8TCY9 931 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ACTRT2Q8TDY3 377 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DNAJB3Q8WWF6 145 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 MARK4Q96L34 752 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 ZFP42Q96MM3 310 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 LENG8Q96PV6 779 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SIKE1Q9BRV8 207 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 GATA5Q9BWX5 397 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DUSP16Q9BY84 665 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 CDH19Q9H159 772 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 FAM124BQ9H5Z6 455 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 IARS2Q9NSE4 1012 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 IGSF9Q9P2J2 1179 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 UBQLN1Q9UMX0 589 aaKnown RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 DERAQ9Y315 318 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 PCDHB12Q9Y5F1 795 aa7.66□□□□□ -1.18
LIMA1-213ENST00000552720 TIMM13Q9Y5L4 95 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-213ENST00000552720 SF3B1O75533 1304 aaKnown RBP eCLIP7.65□□□□□ -1.186e-6■■■■■ 117.3
LIMA1-213ENST00000552720 NYNRINQ9P2P1 1898 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 H3BNX3 289 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 PITPNM1O00562 1244 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 AIM2O14862 343 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 SBK3P0C264 359 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 NPR3P17342 541 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 EPHA3P29320 983 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 NOS2P35228 1153 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 GARSP41250 739 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 ACADSBP45954 432 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 SERPINB8P50452 374 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 AFF1P51825 1210 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 LIMK2P53671 638 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 LILRA4P59901 499 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 BTKQ06187 659 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 GRM3Q14832 879 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 TRIP10Q15642 601 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 DBN1Q16643 649 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 INSCQ1MX18 579 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 PRAMEF19Q5SWL8 479 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 WSCD1Q658N2 575 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 TMEM198Q66K66 360 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 BNIPLQ7Z465 357 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 CLEC14AQ86T13 490 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 TMEM135Q86UB9 458 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 SPATA6LQ8N4H0 392 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 RNF148Q8N7C7 305 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 TDRD5Q8NAT2 981 aaKnown RBP7.65□□□□□ -1.18
LIMA1-213ENST00000552720 OR6J1Q8NGC5 347 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 USP33Q8TEY7 942 aa7.65□□□□□ -1.18
LIMA1-213ENST00000552720 GDPD5Q8WTR4 605 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms