RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PTCH2Q9Y6C5 1203 aa12.74□□□□□ -0.37
COL4A6-209ENST00000545689 GJB6O95452 261 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 MYBL2P10244 700 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TRAF2Q12933 501 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 ERAP2Q6P179 960 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 FOXR1Q6PIV2 292 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CYP4Z2PQ8N1L4 340 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 FNDC5Q8NAU1 212 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 SENP8Q96LD8 212 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PURBQ96QR8 312 aaKnown RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CDT1Q9H211 546 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 STARD7Q9NQZ5 370 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 ATP5F1P24539 256 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PSMA3P25788 255 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 GABRB2P47870 512 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 NCF4Q15080 339 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 SLC44A4Q53GD3 710 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 ARSHQ5FYA8 562 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 LPCAT2Q7L5N7 544 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CERS5Q8N5B7 392 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 KAT2BQ92831 832 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 EBNA1BP2Q99848 306 aaKnown RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 IPPQ9Y573 584 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 GNG14A0A1W2PPG7 69 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 DDX3YO15523 660 aaKnown RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PIGNO95427 931 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CPSF4O95639 269 aaKnown RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PTP4A2Q12974 167 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PREPLQ4J6C6 727 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TCHHL1Q5QJ38 904 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 MFSD5Q6N075 450 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 NEPROQ6NW34 567 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CEP41Q9BYV8 373 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 SATB2Q9UPW6 733 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CABYRO75952 493 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 NFICP08651 508 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 IMPDH2P12268 514 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PSMB4P28070 264 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 GPC1P35052 558 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TRIP4Q15650 581 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 MILR1Q7Z6M3 343 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 LUZP2Q86TE4 346 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 IRF2BP1Q8IU81 584 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CDRT15Q96T59 188 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PAPOLBQ9NRJ5 636 aaKnown RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 DOLKQ9UPQ8 538 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 CAB39Q9Y376 341 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PLIN4Q96Q06 1357 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 DCXO43602 365 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 SERPINA6P08185 405 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 PIK3R1P27986 724 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TTKP33981 857 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 GRM5P41594 1212 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TOP3AQ13472 1001 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-209ENST00000545689 GRIK5Q16478 980 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 TPRKBQ9Y3C4 175 aa12.73□□□□□ -0.37
COL4A6-209ENST00000545689 A0A087WXM4 84 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TTLL13PA6NNM8 815 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 KCNK1O00180 336 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 POMCP01189 267 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PCNAP12004 261 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 LBPP18428 481 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 SLC20A2Q08357 652 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 C1DQ13901 141 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 STAG3L4Q8TBR4 150 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 HASPINQ8TF76 798 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 KRT84Q9NSB2 600 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CPA4Q9UI42 421 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 VIRMAQ69YN4 1812 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PDZK1P1A8MUH7 402 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 STK25O00506 426 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CSDE1O75534 798 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 VEGFAP15692 232 aaPredicted RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 DGKAP23743 735 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PPP2R1BP30154 601 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CHKAP35790 457 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 MAPK8P45983 427 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PAN2Q504Q3 1202 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TRIM48Q8IWZ4 208 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 MCOLN3Q8TDD5 553 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 BBS2Q9BXC9 721 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 WDR41Q9HAD4 459 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ADPRHL2Q9NX46 363 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 OR12D3Q9UGF7 316 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CLOCKO15516 846 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ALDH1A2O94788 518 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 USP17L7P0C7H9 530 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 RPL9P32969 192 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 XIAPP98170 497 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CDC16Q13042 620 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 FSCN1Q16658 493 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 CRY2Q49AN0 593 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PPP1R15BQ5SWA1 713 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 LGI2Q8N0V4 545 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ATG16L2Q8NAA4 619 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 RP9Q8TA86 221 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ZFP42Q96MM3 310 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TMEM216Q9P0N5 145 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 RCOR3Q9P2K3 495 aaPredicted RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 SYNCRIPO60506 623 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms