RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RRN3P2A6NIE6 340 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 KBTBD13C9JR72 458 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 H3BNH8 94 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RNF103O00237 685 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RTCAO00442 366 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 KMOO15229 486 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SNAP91O60641 907 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 GCATO75600 419 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PSAPP07602 524 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SRGAP2BP0DMP2 458 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 MAPTP10636 758 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 THRAP10827 490 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 KRT4P19013 534 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 DCKP27707 260 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CASP5P51878 434 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NAA20P61599 178 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CETN1Q12798 172 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SF3A3Q12874 501 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP28-213ENST00000544967 MRPL28Q13084 256 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 RFTN1Q14699 578 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 TRIP10Q15642 601 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CNGA3Q16281 694 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ARSHQ5FYA8 562 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RABGAP1LQ5R372 815 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RNASEH2BQ5TBB1 312 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 LRRC38Q5VT99 294 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 METTL21CQ5VZV1 264 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SPOPLQ6IQ16 392 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 LPCAT2Q7L5N7 544 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 EEPD1Q7L9B9 569 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CATSPER4Q7RTX7 472 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SETD3Q86TU7 594 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 CARM1Q86X55 608 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CCDC60Q8IWA6 550 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 PNPT1Q8TCS8 783 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 AFG1LQ8WV93 481 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 DCAKDQ8WVC6 231 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ZNF597Q96LX8 424 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SH3GL1Q99961 368 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 STRA6Q9BX79 667 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TPK1Q9H3S4 243 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 BCAS3Q9H6U6 928 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 MRPL40Q9NQ50 206 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 WRAP73Q9P2S5 460 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 CDH22Q9UJ99 828 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RIMS3Q9UJD0 308 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NOCTQ9UK39 431 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 KIAA1024Q9UPX6 916 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ERGIC3Q9Y282 383 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 IFT52Q9Y366 437 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 A0A087WXM4 84 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CCDC85CA6NKD9 419 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SLITRK3O94933 977 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PGM3O95394 542 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PGRP06401 933 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ITGAVP06756 1048 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 EN2P19622 333 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 MARCKSL1P49006 195 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NUMBP49757 651 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ESRRGP62508 458 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CLDN10P78369 228 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 KCNK18Q7Z418 384 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 GPBP1Q86WP2 473 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 FAM71AQ8IYT1 594 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TTC39CQ8N584 583 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 GLIS3Q8NEA6 775 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ANKK1Q8NFD2 765 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TSPAN14Q8NG11 270 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PRPF31Q8WWY3 499 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 COPS5Q92905 334 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PLEKHA8Q96JA3 519 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SPATA33Q96N06 139 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 BCL7BQ9BQE9 202 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 RTKNQ9BST9 563 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 C2orf49Q9BVC5 232 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 TMEM106CQ9BVX2 250 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 MROQ9BYG7 248 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 GRIP2Q9C0E4 1043 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 DRC3Q9H069 523 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 AP5M1Q9H0R1 490 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ST6GALNAC4Q9H4F1 302 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ZNF304Q9HCX3 659 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SAYSD1Q9NPB0 183 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 DDX18Q9NVP1 670 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 SUCOQ9UBS9 1254 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 APPL1Q9UKG1 709 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ERVK-11Q9UQG0 969 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 POMPQ9Y244 141 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PATJQ8NI35 1801 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PRSS51A0A1B0GVH4 220 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 TCRBV7S2A1N4TA0A589 114 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 HBP1O60381 514 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 FOXD2O60548 495 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 MAFO75444 373 aaPredicted RBP5.37□□□□□ -1.55
USP28-213ENST00000544967 FBXO21O94952 628 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 RAG1P15918 1043 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 HOXD13P35453 343 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 PSMD8P48556 350 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 RENBPP51606 427 aa5.37□□□□□ -1.55
USP28-213ENST00000544967 C21orf59P57076 290 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms