RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TRPV2Q9Y5S1 764 aa12.81□□□□□ -0.36
RNF4-222ENST00000541204 LOC100653049A0A140TA62 436 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 FAM72CH0Y354 149 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 RNASEH1O60930 286 aaKnown RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 DUSP11O75319 330 aaKnown RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 KRT34O76011 436 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 KLHL2O95198 593 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 PRKCGP05129 697 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 MGAT1P26572 445 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 INHBEP58166 350 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ASPHQ12797 758 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 FAM72AQ5TYM5 149 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 LPCAT4Q643R3 524 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 FAM72DQ6L9T8 149 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 CES3Q6UWW8 571 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 FAM72BQ86X60 149 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 MFN1Q8IWA4 741 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.8□□□□□ -0.36
RNF4-222ENST00000541204 EFCAB3Q8N7B9 438 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 HTR3CQ8WXA8 447 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 SOCS4Q8WXH5 440 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ATP2A3Q93084 1043 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 PGLYRP2Q96PD5 576 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 SIKE1Q9BRV8 207 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 MTG1Q9BT17 334 aaPredicted RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 ZNF358Q9NW07 568 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 SNUPNO95149 360 aaKnown RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 SERPINE1P05121 402 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ITGA2BP08514 1039 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 NCAM1P13591 858 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 NCF2P19878 526 aaPredicted RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 LRPAP1P30533 357 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 NR2C2P49116 596 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 STXBP5Q5T5C0 1151 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 AP1ARQ63HQ0 302 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 STEAP4Q687X5 459 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 PDPK2PQ6A1A2 396 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 AGMOQ6ZNB7 445 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 DHDDSQ86SQ9 333 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 RASSF3Q86WH2 238 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 COLGALT1Q8NBJ5 622 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 PPP4R1Q8TF05 950 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 RNF139Q8WU17 664 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 TFB1MQ8WVM0 346 aaKnown RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 CDKL2Q92772 493 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ANLNQ9NQW6 1124 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 TMEM216Q9P0N5 145 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 ADAMTS6Q9UKP5 1117 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 MAGED2Q9UNF1 606 aaPredicted RBP12.8□□□□□ -0.36
RNF4-222ENST00000541204 SNX10Q9Y5X0 201 aa12.8□□□□□ -0.36
RNF4-222ENST00000541204 F8W810 466 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 KCNK1O00180 336 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 ZMPSTE24O75844 475 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 B3GAT3O94766 335 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 ZFXP17010 805 aaPredicted RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 BRCC3P46736 316 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 OLIG2Q13516 323 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 CCNIQ14094 377 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 CFAP157Q5JU67 520 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 AAGABQ6PD74 315 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 CYS1Q717R9 158 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 STRADAQ7RTN6 431 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 LIMS2Q7Z4I7 341 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 OR6Y1Q8NGX8 325 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 ACMSDQ8TDX5 336 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 ARNTL2Q8WYA1 636 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 SMOQ99835 787 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 TRIM4Q9C037 500 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 DNAI2Q9GZS0 605 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 DCDC2Q9UHG0 476 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 GABRDO14764 452 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 F7P08709 466 aaPredicted RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 ERVK-10P10266 1014 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 RPL34P49207 117 aaKnown RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 FLT3LGP49771 235 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 DBN1Q16643 649 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 TIGD5Q53EQ6 642 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 SFT2D3Q587I9 215 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 TCHHL1Q5QJ38 904 aaPredicted RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 FAM35AQ86V20 835 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 PDSS2Q86YH6 399 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 PPP2R3CQ969Q6 453 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 STN1Q9H668 368 aaKnown RBP12.79□□□□□ -0.36
RNF4-222ENST00000541204 COPG2Q9UBF2 871 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 CDH22Q9UJ99 828 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 Q9Y3F1 56 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 USP3Q9Y6I4 520 aa12.79□□□□□ -0.36
RNF4-222ENST00000541204 A0A0A0MRY4 1105 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 ZNF487B1APH4 448 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 RNF103O00237 685 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 MGEA5O60502 916 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 CCNT2O60583 730 aaKnown RBP12.78□□□□□ -0.36
RNF4-222ENST00000541204 DAB1O75553 588 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 FYNP06241 537 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 TYK2P29597 1187 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 HOXC8P31273 242 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 NOS2P35228 1153 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 ITGA9Q13797 1035 aa12.78□□□□□ -0.36
RNF4-222ENST00000541204 RBBP5Q15291 538 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms