RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 COILP38432 576 aaPredicted RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 PTPN9P43378 593 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 AARSP49588 968 aaKnown RBP eCLIP8.65□□□□□ -1.025e-11■■■□□ 14.8
CHD4-208ENST00000540960 GALK1P51570 392 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 CDR1P51861 262 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 RNASE9P60153 205 aaKnown RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 SMARCB1Q12824 385 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 NFATC3Q12968 1075 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 MTA1Q13330 715 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SLC14A1Q13336 389 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 PTPN20Q4JDL3 420 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 PKDCCQ504Y2 493 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 GLRA4Q5JXX5 417 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 CCDC137Q6PK04 289 aaKnown RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 LRIG3Q6UXM1 1119 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 C4orf50Q6ZRC1 276 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SLC26A9Q7LBE3 791 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 PCGF5Q86SE9 256 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 ARID3BQ8IVW6 561 aaPredicted RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 SIX6OS1Q8N1H7 587 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 GALNT15Q8N3T1 639 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 KCTD6Q8NC69 237 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 TSTD1Q8NFU3 115 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SHKBP1Q8TBC3 707 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 FAM71BQ8TC56 605 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SETD7Q8WTS6 366 aaKnown RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 IRGQQ8WZA9 623 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 KRT35Q92764 455 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SENP8Q96LD8 212 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 ACBD6Q9BR61 282 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 MRPL45Q9BRJ2 306 aaKnown RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 STMN4Q9H169 189 aaPredicted RBP8.65□□□□□ -1.02
CHD4-208ENST00000540960 GOLPH3Q9H4A6 298 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 LRRC4Q9HBW1 653 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 PNPLA8Q9NP80 782 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 WHRNQ9P202 907 aa8.65□□□□□ -1.02
CHD4-208ENST00000540960 SPTBN1Q01082 2364 aaKnown RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 NUP210Q8TEM1 1887 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 SF3B1O75533 1304 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD4-208ENST00000540960 CFAP69A5D8W1 941 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 GOLGA8KD6RF30 607 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 PTGESO14684 152 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 RFC1P35251 1148 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 P2RY2P41231 377 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 GUCY2FP51841 1108 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 GABPB1Q06547 395 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 ZNF211Q13398 564 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 SMAD1Q15797 465 aaKnown RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 NFE2Q16621 373 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 UPP1Q16831 310 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 ITPRIPL2Q3MIP1 535 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 GLIPR1L2Q4G1C9 344 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 CCDC157Q569K6 752 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 PPP1R26Q5T8A7 1209 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 CYP4A22Q5TCH4 519 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 SND1Q7KZF4 910 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD4-208ENST00000540960 BEND5Q7L4P6 421 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 STRADAQ7RTN6 431 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 TTC30AQ86WT1 665 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 JAMLQ86YT9 394 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 DCP1BQ8IZD4 617 aaKnown RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 SCML4Q8N228 414 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 PRELID2Q8N945 189 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD4-208ENST00000540960 BAHD1Q8TBE0 780 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 MYCBPAPQ8TBZ2 947 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 SMARCD1Q96GM5 515 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 FAM84AQ96KN4 292 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 TWNKQ96RR1 684 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 CPXM1Q96SM3 734 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 FMO2Q99518 471 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 MED10Q9BTT4 135 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 DDX47Q9H0S4 455 aaKnown RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 IL21RQ9HBE5 538 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 CNGB3Q9NQW8 809 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 FAM53CQ9NYF3 392 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 RCOR3Q9P2K3 495 aaPredicted RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 AMACRQ9UHK6 382 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 DMGDHQ9UI17 866 aaKnown RBP8.64□□□□□ -1.03
CHD4-208ENST00000540960 MAN2B2Q9Y2E5 1009 aa8.64□□□□□ -1.03
CHD4-208ENST00000540960 CENPEQ02224 2701 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 LRRD1A4D1F6 860 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 C2CD4BA6NLJ0 364 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 M0QZQ0 153 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 SYN3O14994 580 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 MDM4O15151 490 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 B3GAT3O94766 335 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 RARAP10276 462 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 RALAP11233 206 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 ATF2P15336 505 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 STIP1P31948 543 aaKnown RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 ACTN2P35609 894 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 VASPP50552 380 aaPredicted RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 RPL7AP62424 266 aaKnown RBP8.63□□□□□ -1.03
CHD4-208ENST00000540960 SLC7A5Q01650 507 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 PDE4CQ08493 712 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 KRT81Q14533 505 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 ARL13BQ3SXY8 428 aa8.63□□□□□ -1.03
CHD4-208ENST00000540960 C6orf132Q5T0Z8 1188 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms