RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LBPP18428 481 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 ALDH4A1P30038 563 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 NEK3P51956 506 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 MTMR2Q13614 643 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 SKIV2LQ15477 1246 aaKnown RBP8.9□□□□□ -0.99
YBX3-208ENST00000540447 MEA1Q16626 185 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 TFDP3Q5H9I0 405 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 TTC23LQ6PF05 361 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 CNSTQ6PJW8 725 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 FBXO33Q7Z6M2 555 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 FAM160B2Q86V87 743 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 ZNF431Q8TF32 576 aaPredicted RBP8.9□□□□□ -0.99
YBX3-208ENST00000540447 TPD52L3Q96J77 140 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 NMUR2Q9GZQ4 415 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 LIN28AQ9H9Z2 209 aaKnown RBP8.9□□□□□ -0.99
YBX3-208ENST00000540447 COQ3Q9NZJ6 369 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 ACOT9Q9Y305 439 aa8.9□□□□□ -0.99
YBX3-208ENST00000540447 AURKAO14965 403 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 DDX3YO15523 660 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 PLATP00750 562 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SNRPB2P08579 225 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 PAEPP09466 180 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 PON1P27169 355 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 KLHL35Q6PF15 583 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MACC1Q6ZN28 852 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 NT5DC3Q86UY8 548 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SGMS1Q86VZ5 419 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SLC22A9Q8IVM8 553 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 DEPDC4Q8N2C3 294 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MARK4Q96L34 752 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 NAT9Q9BTE0 207 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 WDR70Q9NW82 654 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 IGSF9Q9P2J2 1179 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.89□□□□□ -0.99
YBX3-208ENST00000540447 RAD54BQ9Y620 910 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 FAM25EA8MYX2 175 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 K7EPI3 171 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 CTDNEP1O95476 244 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 RBP1P09455 135 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 NUDT7P0C024 238 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 PDGFRAP16234 1089 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 KCNA5P22460 613 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 ARF3P61204 181 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 DYNLL1P63167 89 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 ARF1P84077 181 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 SHQ1Q6PI26 577 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 CHMP1BQ7LBR1 199 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 TIGD4Q8IY51 512 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 OR5J2Q8NH18 312 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SEMA4DQ92854 862 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SLITRK2Q9H156 845 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MTRRQ9UBK8 725 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MSX2P35548 267 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 TCP10Q12799 353 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 TGFBIQ15582 683 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 ULK3Q6PHR2 472 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SEC14L1Q92503 715 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 TCEAL3Q969E4 200 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 ZNF496Q96IT1 587 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 HNRNPABQ99729 332 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 SSX3Q99909 188 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 XPR1Q9UBH6 696 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 AP4E1Q9UPM8 1137 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 CC2D2AQ9P2K1 1620 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SLC22A1O15245 554 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 CST1P01037 141 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 FBXW4P57775 412 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 ADGRE1Q14246 886 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SQLEQ14534 574 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MTERF2Q49AM1 385 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 VWA5B1Q5TIE3 1220 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 FAM122CQ6P4D5 195 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 JPH3Q8WXH2 748 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 HAVCR1Q96D42 359 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 NODALQ96S42 347 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SP110Q9HB58 689 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 SMPD3Q9NY59 655 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 SH3BP4Q9P0V3 963 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 AASSQ9UDR5 926 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 KAT6BQ8WYB5 2073 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 MAGI2Q86UL8 1455 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 FUOMA2VDF0 154 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 KBTBD13C9JR72 458 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 CLPXO76031 633 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 HIST1H2AGP0C0S8 130 aaPredicted RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 HIST1H2ADP20671 130 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 PAICSP22234 425 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 GYG1P46976 350 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 RAB5BP61020 215 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 VN1R5Q7Z5H4 357 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 KIF18BQ86Y91 864 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 THNSL1Q8IYQ7 743 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 HIST1H2AHQ96KK5 128 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 HIST1H2AJQ99878 128 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 H2AFJQ9BTM1 129 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 TRIT1Q9H3H1 467 aaKnown RBP8.89□□□□□ -0.99
YBX3-208ENST00000540447 TPK1Q9H3S4 243 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 HMGXB4Q9UGU5 601 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 RNF112Q9ULX5 631 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms