RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 GIMAP1Q8WWP7 306 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 ZUFSPQ96AP4 578 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CMTM5Q96DZ9 223 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 ZNF347Q96SE7 839 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 PCDHB18PQ96TA0 734 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CALN1Q9BXU9 219 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 RAB34Q9BZG1 259 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 WDR11Q9BZH6 1224 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MROH8Q9H579 483 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 RMND5AQ9H871 391 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MORF4L1Q9UBU8 362 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 PCDHA12Q9UN75 941 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 SLC27A5Q9Y2P5 690 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 FAM172BPA6NC97 362 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 E9PMD0 336 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CALUO43852 315 aaPredicted RBP9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 ETS1P14921 441 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CCNA2P20248 432 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MAP4P27816 1152 aaKnown RBP9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 L1CAMP32004 1257 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MAPK10P53779 464 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CCNA1P78396 465 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 HSPA14Q0VDF9 509 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 SREBF2Q12772 1141 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 KCTD2Q14681 263 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 LRIT3Q3SXY7 679 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CCDC14Q49A88 953 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 SLC51BQ86UW2 128 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 VSIG10LQ86VR7 867 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 ZNF354CQ86Y25 554 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 ELMOD2Q8IZ81 293 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 TRIB2Q92519 343 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 CAPNS2Q96L46 248 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MMP19Q99542 508 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 MXRA8Q9BRK3 442 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 APOL6Q9BWW8 343 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 C12orf10Q9HB07 376 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 NEK6Q9HC98 313 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 TXNDC16Q9P2K2 825 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 APEX2Q9UBZ4 518 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 SPEF1Q9Y4P9 236 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 IKBKGQ9Y6K9 419 aa9.67□□□□□ -0.86
CTNNA1-243ENST00000540387 PCM1Q15154 2024 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SOWAHBA6NEL2 793 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 GOLGA8SH3BPF8 625 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 HAT1O14929 419 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CLIC2O15247 247 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SLC16A3O15427 465 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SNNO75324 88 aaPredicted RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 RNASEH2AO75792 299 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CYP1A2P05177 515 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 XRCC1P18887 633 aaPredicted RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 MSX2P35548 267 aaPredicted RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 FMO5P49326 533 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 IFITM3Q01628 133 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 GPS1Q13098 491 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ALCAMQ13740 583 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ZNF846Q147U1 533 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 MORF4L2Q15014 288 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CARTPTQ16568 116 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 FAM110CQ1W6H9 321 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 HACE1Q8IYU2 909 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ZNF786Q8N393 782 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SHCBP1Q8NEM2 672 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 NACC1Q96RE7 527 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ANKRD60Q9BZ19 345 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 INTS2Q9H0H0 1204 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 NOL6Q9H6R4 1146 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 WDR6Q9NNW5 1121 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 C12orf4Q9NQ89 552 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 THG1LQ9NWX6 298 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SIRPGQ9P1W8 387 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ARHGAP26Q9UNA1 814 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 APOBEC2Q9Y235 224 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 UBIAD1Q9Y5Z9 338 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 IQANK1A0A1B0GTG1 560 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CLDN25C9JDP6 229 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 H7C0C1 242 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 PDXKO00764 312 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CYB561D2O14569 222 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 COPEO14579 308 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SLC22A1O15245 554 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 IDH3BO43837 385 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 NOL3O60936 208 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 TSPAN9O75954 239 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 KRT6AP02538 564 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 KRT6BP04259 564 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 PLA2G4BP0C869 781 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CES1P23141 567 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 ARSEP51690 589 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 PRAMEP78395 509 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 FAAP100Q0VG06 881 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 NOGQ13253 232 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 NUDCD3Q8IVD9 361 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 BHLHE22Q8NFJ8 381 aaPredicted RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 TOR1AIP2Q8NFQ8 470 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CDK5RAP1Q96SZ6 601 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 SENP7Q9BQF6 1050 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 CLSTN3Q9BQT9 956 aa9.66□□□□□ -0.86
CTNNA1-243ENST00000540387 POLR1BQ9H9Y6 1135 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms