RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 USH1CQ9Y6N9 552 aa17.5■□□□□ 0.39
PCDHB17P-201ENST00000539533 NUP205Q92621 2012 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 ZNF135P52742 658 aaPredicted RBP17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 PDIA2Q13087 525 aaKnown RBP17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 HIF1AQ16665 826 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 C14orf80Q86SX3 495 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 ZBED8Q8IZ13 594 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 TTLL2Q9BWV7 592 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 COMMD8Q9NX08 183 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 MARCH2Q9P0N8 246 aa17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 CORO1CQ9ULV4 474 aaPredicted RBP17.49■□□□□ 0.39
PCDHB17P-201ENST00000539533 PRPF4O43172 522 aaKnown RBP eCLIP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 HMBSP08397 361 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 PPIGQ13427 754 aaKnown RBP eCLIP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 SPARCL1Q14515 664 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 RGS9BPQ6ZS82 235 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 CENPUQ71F23 418 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 PDZD4Q76G19 769 aaPredicted RBP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 RNF217Q8TC41 542 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 CELF6Q96J87 481 aaKnown RBP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 LRRC37BQ96QE4 947 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 SEPT10Q9P0V9 454 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 ALOX15BO15296 676 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 TLR5O60602 858 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 LINC00271P0C7V0 271 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 TARSP26639 723 aaKnown RBP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 FPGSQ05932 587 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 PIK3R6Q5UE93 754 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 AP1ARQ63HQ0 302 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 TPGS2Q68CL5 300 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 TDRPQ86YL5 185 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 ANKMY2Q8IV38 441 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 AGGF1Q8N302 714 aaeCLIP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 DEPDC1BQ8WUY9 529 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 ZBED2Q9BTP6 218 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 UBE2OQ9C0C9 1292 aaKnown RBP17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 TRABDQ9H4I3 376 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 SLCO1B3Q9NPD5 702 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 PCDHB12Q9Y5F1 795 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 KIAA1671Q9BY89 1806 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 ALPK3Q96L96 1907 aa17.48■□□□□ 0.39
PCDHB17P-201ENST00000539533 F5H423 210 aaPredicted RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 FGF18O76093 207 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 APRTP07741 180 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 HMGA1P17096 107 aaKnown RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 SLC18A1P54219 525 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 MLLT6P55198 1093 aaPredicted RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 ARL4CP56559 192 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 HTRA4P83105 476 aaPredicted RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 RAB33AQ14088 237 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 MANEALQ5VSG8 457 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 FIBCD1Q8N539 461 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 TMEM237Q96Q45 408 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 FAM167BQ9BTA0 163 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 YIPF3Q9GZM5 350 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 KLC2Q9H0B6 622 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 MRPL17Q9NRX2 175 aaKnown RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 SLC12A8A0AV02 714 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 E9PAM4 449 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 POC1B-GALNT4F8VUJ3 575 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 KCNK1O00180 336 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 RNF103O00237 685 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 CHADO15335 359 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 TUBP50607 506 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 WASHC5Q12768 1159 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 BLMHQ13867 455 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 TMEM240Q5SV17 173 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 CAPN12Q6ZSI9 719 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 KCNV2Q8TDN2 545 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 ZNF512Q96ME7 567 aaPredicted RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 TTC25Q96NG3 672 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 OLA1Q9NTK5 396 aaKnown RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 NDFIP2Q9NV92 336 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 MPP6Q9NZW5 540 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 NKX1-2Q9UD57 310 aaPredicted RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 HAO1Q9UJM8 370 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 GRID1Q9ULK0 1009 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 SMG5Q9UPR3 1016 aaKnown RBP17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 YIPF1Q9Y548 306 aa17.47■□□□□ 0.39
PCDHB17P-201ENST00000539533 A0A0A0MRY4 1105 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 LIN7AO14910 233 aaPredicted RBP17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 EDF1O60869 148 aaKnown RBP17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 AVILO75366 819 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 DCTN3O75935 186 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SLC2A3P11169 496 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SYN1P17600 705 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 KRT15P19012 456 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 TRIP4Q15650 581 aaPredicted RBP17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 PDK4Q16654 411 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 C7orf61Q8IZ16 206 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SPDYE1Q8NFV5 336 aaPredicted RBP17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 INPP5DQ92835 1189 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SPATA13Q96N96 652 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SMC6Q96SB8 1091 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 WDR83Q9BRX9 315 aaKnown RBP17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 VANGL2Q9ULK5 521 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 TEX28O15482 410 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 SPATA31D3P0C874 917 aa17.46■□□□□ 0.39
PCDHB17P-201ENST00000539533 ALDH3A1P30838 453 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms