RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TMEM121Q9BTD3 319 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 SACM1LQ9NTJ5 587 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 TSPAN16Q9UKR8 245 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 TREHO43280 583 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 LRCH4O75427 683 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 ZNF12P17014 697 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 PSMC3P17980 439 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 CDH5P33151 784 aaPredicted RBP14.28□□□□□ -0.12
LIG1-203ENST00000536218 NRF1Q16656 503 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 EFHC2Q5JST6 749 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 FAM91A1Q658Y4 838 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 NEPROQ6NW34 567 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 ZCCHC23Q6ZST2 131 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 ALKBH8Q96BT7 664 aaKnown RBP14.28□□□□□ -0.12
LIG1-203ENST00000536218 MRPL45Q9BRJ2 306 aaKnown RBP14.28□□□□□ -0.12
LIG1-203ENST00000536218 SLC13A1Q9BZW2 595 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 PIN4Q9Y237 131 aaKnown RBP14.28□□□□□ -0.12
LIG1-203ENST00000536218 SSX2IPQ9Y2D8 614 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 COL1A2P08123 1366 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A9O60656 530 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 S100BP04271 92 aaPredicted RBP14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A6P19224 532 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 CYP3A5P20815 502 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A1P22309 533 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A4P22310 534 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A3P35503 534 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A5P35504 534 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 ZBTB17Q13105 803 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 NANOGP8Q6NSW7 305 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 RSPH3Q86UC2 560 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 OR6B3Q8NGW1 331 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 CALN1Q9BXU9 219 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 LHX5Q9H2C1 402 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A7Q9HAW7 530 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A10Q9HAW8 530 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 UGT1A8Q9HAW9 530 aa14.28□□□□□ -0.12
LIG1-203ENST00000536218 SGK1O00141 431 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 PSMD12O00232 456 aaPredicted RBP14.27□□□□□ -0.12
LIG1-203ENST00000536218 CYB561D2O14569 222 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 COPEO14579 308 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 CASQ2O14958 399 aaPredicted RBP14.27□□□□□ -0.12
LIG1-203ENST00000536218 ALOX15BO15296 676 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 PABPC1P11940 636 aaKnown RBP14.27□□□□□ -0.12
LIG1-203ENST00000536218 KLRC2P26717 231 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 ATICP31939 592 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 GPD2P43304 727 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 CAMK2BQ13554 666 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 HIF1AQ16665 826 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 BBS9Q3SYG4 887 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 SCYL2Q6P3W7 929 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 SIX5Q8N196 739 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 PPP1R14CQ8TAE6 165 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 TMEM40Q8WWA1 233 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 E2F7Q96AV8 911 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 NT5C1AQ9BXI3 368 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 CEP44Q9C0F1 390 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 C1orf21Q9H246 121 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 ADAMTS10Q9H324 1103 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 SSU72Q9NP77 194 aaKnown RBP14.27□□□□□ -0.12
LIG1-203ENST00000536218 PLXNA1Q9UIW2 1896 aa14.27□□□□□ -0.12
LIG1-203ENST00000536218 SF3B1O75533 1304 aaKnown RBP eCLIP14.27□□□□□ -0.124e-6■■■■■ 81.2
LIG1-203ENST00000536218 SLC15A5A6NIM6 579 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 LIASO43766 372 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 CST8O60676 142 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 VDRP11473 427 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 ZNF23P17027 643 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 TCEA1P23193 301 aaKnown RBP14.27□□□□□ -0.13
LIG1-203ENST00000536218 PTK7Q13308 1070 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 ITGADQ13349 1161 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 C15orf59Q2T9L4 293 aaPredicted RBP14.27□□□□□ -0.13
LIG1-203ENST00000536218 TFDP3Q5H9I0 405 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 PPP6R3Q5H9R7 873 aaPredicted RBP14.27□□□□□ -0.13
LIG1-203ENST00000536218 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIG1-203ENST00000536218 KCTD6Q8NC69 237 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 FOXP3Q9BZS1 431 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 RNF39Q9H2S5 420 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 GOLGA2P5Q9HBQ8 144 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 ITGA11Q9UKX5 1188 aa14.27□□□□□ -0.13
LIG1-203ENST00000536218 hCG_1818297A0A087WSY0 165 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 GIPC1O14908 333 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 RECQL4O94761 1208 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 NCF2P19878 526 aaPredicted RBP14.26□□□□□ -0.13
LIG1-203ENST00000536218 GRM5P41594 1212 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 TAP1Q03518 808 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 FAAP100Q0VG06 881 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 MFSD10Q14728 455 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 HADHQ16836 314 aaKnown RBP14.26□□□□□ -0.13
LIG1-203ENST00000536218 GOLGA7BQ2TAP0 167 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 PPP1R26Q5T8A7 1209 aaPredicted RBP14.26□□□□□ -0.13
LIG1-203ENST00000536218 KRT80Q6KB66 452 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 SLC27A1Q6PCB7 646 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 CHSY1Q86X52 802 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 CYP3A43Q9HB55 503 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 GIN1Q9NXP7 522 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 PSMD13Q9UNM6 376 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 TIMM22Q9Y584 194 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 PLXNB2O15031 1838 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 BRCA2P51587 3418 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 CLUHO75153 1309 aa14.26□□□□□ -0.13
LIG1-203ENST00000536218 RRN3P2A6NIE6 340 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms