RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 CCNI2Q6ZMN8 369 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-207ENST00000531727 C14orf80Q86SX3 495 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 TMEM35BQ8NCS4 154 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 OR52K2Q8NGK3 314 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 OR14C36Q8NHC7 312 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 SKA1Q96BD8 255 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 NPY6RQ99463 290 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 PIGVQ9NUD9 493 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 DACH1Q9UI36 760 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 OR51B4Q9Y5P0 310 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 PTPRBP23467 1997 aa17.31■□□□□ 0.36
CPSF1-207ENST00000531727 A0A1B0GTQ1 180 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 ATP9BO43861 1147 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 DKK1O94907 266 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 WNT1P04628 370 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 CAPNS1P04632 268 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 GGCXP38435 758 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 GABRB2P47870 512 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 CXCR3P49682 368 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 CDH4P55283 916 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 KCNMA1Q12791 1236 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 RAPGEF1Q13905 1077 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 HSP90AA4PQ58FG1 418 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 BRMS1LQ5PSV4 323 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 DSG4Q86SJ6 1040 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 OR8D1Q8WZ84 308 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 FAM131CQ96AQ9 280 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 SIK2Q9H0K1 926 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 PDCL3Q9H2J4 239 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 WDCPQ9H6R7 721 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 AASDHPPTQ9NRN7 309 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 ARHGEF38Q9NXL2 777 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.3■□□□□ 0.36
CPSF1-207ENST00000531727 VPS28Q9UK41 221 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 STAP1Q9ULZ2 295 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D30Q9Y2I9 924 aa17.3■□□□□ 0.36
CPSF1-207ENST00000531727 PLXNB3Q9ULL4 1909 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 TNFSF14O43557 240 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 ADCY5O95622 1261 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 CYP11B1P15538 503 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 TFE3P19532 575 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 CD38P28907 300 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 SCNN1AP37088 669 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 SULT1E1P49888 294 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 METAP1P53582 386 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 RNASE9P60153 205 aaKnown RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 IL9RQ01113 521 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 INAVAQ3KP66 663 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 ACCSLQ4AC99 568 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 KLHDC7AQ5VTJ3 777 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 NT5C3BQ969T7 300 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 C18orf8Q96DM3 657 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 PGAP3Q96FM1 320 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 ELF4Q99607 663 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 NAA15Q9BXJ9 866 aaKnown RBP17.29■□□□□ 0.36
CPSF1-207ENST00000531727 TKTL2Q9H0I9 626 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 KDM4CQ9H3R0 1056 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 ANLNQ9NQW6 1124 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 SARDHQ9UL12 918 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 FHOD1Q9Y613 1164 aa17.29■□□□□ 0.36
CPSF1-207ENST00000531727 IGF2RP11717 2491 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3DA0A087WVF3 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3IA0A087WXS9 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3EA0A087X179 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3KA0A087X1G2 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 A0A1W2PR77 199 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3FA6NER0 549 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3LB9A6J9 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 PES1O00541 588 aaKnown RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 WNT9AO14904 365 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 ALOX15BO15296 676 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 SLC7A4O43246 635 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 LATO43561 262 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 CNTN5O94779 1100 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 F9P00740 461 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3HP0C7X1 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 PPP2CBP62714 309 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 PPP2CAP67775 309 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 DEUP1Q05D60 604 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 SCAPQ12770 1279 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 DLG2Q15700 870 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 FAM102AQ5T9C2 384 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 FAM46CQ5VWP2 391 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3GQ6DHY5 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3CQ6IPX1 549 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TMPRSS7Q7RTY8 843 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 ZNF683Q8IZ20 524 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TBC1D3Q8IZP1 549 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 SH2D3CQ8N5H7 860 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 SERAC1Q96JX3 654 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 MUC3BQ9H195 1237 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 NUP62CLQ9H1M0 184 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 TMEM51Q9NW97 253 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 RALYQ9UKM9 306 aaKnown RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 PPM1HQ9ULR3 514 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 PAXBP1Q9Y5B6 917 aa17.28■□□□□ 0.36
CPSF1-207ENST00000531727 COL5A1P20908 1838 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-207ENST00000531727 GOLGA8CPA6NN73 597 aa17.27■□□□□ 0.36
CPSF1-207ENST00000531727 C1QTNF3-AMACRE9PGA6 284 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms