RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RNF39Q9H2S5 420 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 ANLNQ9NQW6 1124 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 ZDHHC7Q9NXF8 308 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 STAP1Q9ULZ2 295 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 SHROOM3Q8TF72 1996 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.67■□□□□ 0.74
VPS28-213ENST00000530983 E9PBE3 544 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 KLHL41O60662 606 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 RNASEH1O60930 286 aaKnown RBP19.67■□□□□ 0.74
VPS28-213ENST00000530983 HSPA4LO95757 839 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 AMHP03971 560 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 NPR3P17342 541 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 ERCC2P18074 760 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 YY1P25490 414 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 PNPLA4P41247 253 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 CUL3Q13618 768 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 LAMB3Q13751 1172 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 LRRC36Q1X8D7 754 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 ANKRD20A4Q4UJ75 823 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 HSP90AA5PQ58FG0 334 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 LPCAT4Q643R3 524 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 KCTD11Q693B1 232 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 EFCAB3Q8N7B9 438 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 MFSD3Q96ES6 412 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 CASS4Q9NQ75 786 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 BFARQ9NZS9 450 aa19.67■□□□□ 0.74
VPS28-213ENST00000530983 HUS1O60921 280 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 FYNP06241 537 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 COX4I1P13073 169 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 DARSP14868 501 aaKnown RBP19.66■□□□□ 0.74
VPS28-213ENST00000530983 FRG1Q14331 258 aaKnown RBP19.66■□□□□ 0.74
VPS28-213ENST00000530983 R3HDM1Q15032 1099 aaKnown RBP19.66■□□□□ 0.74
VPS28-213ENST00000530983 TCHHL1Q5QJ38 904 aaPredicted RBP19.66■□□□□ 0.74
VPS28-213ENST00000530983 DNAAF3Q8N9W5 541 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 ACVR1CQ8NER5 493 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 EPAS1Q99814 870 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 NUP205Q92621 2012 aa19.66■□□□□ 0.74
VPS28-213ENST00000530983 ZBTB24O43167 697 aaPredicted RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 MPOP05164 745 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 ACAT1P24752 427 aaKnown RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 PRDX6P30041 224 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 CD68P34810 354 aaPredicted RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 ADRA1BP35368 520 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 TBL3Q12788 808 aaKnown RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 KLF10Q13118 480 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 SEMA3BQ13214 749 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 SFT2D3Q587I9 215 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 FSCBQ5H9T9 825 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 CERCAMQ5T4B2 595 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 CLEC20AQ6ZU45 233 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 FBXW8Q8N3Y1 598 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 NPWQ8N729 165 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 GPRC5AQ8NFJ5 357 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 ADAM32Q8TC27 787 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 URGCPQ8TCY9 931 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 CDCA5Q96FF9 252 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 MCMBPQ9BTE3 642 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 ZNF236Q9UL36 1845 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 BPTFQ12830 3046 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 TMEM114B3SHH9 223 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 LTFP02788 710 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 C2P06681 752 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 GJA5P36382 358 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 LILRA4P59901 499 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 PPIDQ08752 370 aaKnown RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 MSLNQ13421 630 aaPredicted RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 SV2CQ496J9 727 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 CFAP157Q5JU67 520 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 HIPK4Q8NE63 616 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 AGR3Q8TD06 166 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 KCTD13Q8WZ19 329 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 OR52B2Q96RD2 323 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 MLPHQ9BV36 600 aaPredicted RBP19.65■□□□□ 0.74
VPS28-213ENST00000530983 ARHGAP26Q9UNA1 814 aa19.65■□□□□ 0.74
VPS28-213ENST00000530983 NRP1O14786 923 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 TRIM13O60858 407 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 KCNE1P15382 129 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 CD1EP15812 388 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 CYP2B6P20813 491 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 WARSP23381 471 aaKnown RBP19.64■□□□□ 0.74
VPS28-213ENST00000530983 PEX2P28328 305 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 NUMBP49757 651 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 MTTPP55157 894 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 DGKDQ16760 1214 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 DUSP28Q4G0W2 176 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 XKR4Q5GH76 650 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 SIX6OS1Q8N1H7 587 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 DRAXINQ8NBI3 349 aaPredicted RBP19.64■□□□□ 0.74
VPS28-213ENST00000530983 SLC7A14Q8TBB6 771 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 TMEM40Q8WWA1 233 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 GBP5Q96PP8 586 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 FAM192AQ9GZU8 254 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 NMRAL1Q9HBL8 299 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 LRRC4Q9HBW1 653 aa19.64■□□□□ 0.74
VPS28-213ENST00000530983 WDR6Q9NNW5 1121 aaKnown RBP19.64■□□□□ 0.74
VPS28-213ENST00000530983 MAGED2Q9UNF1 606 aaPredicted RBP19.64■□□□□ 0.74
VPS28-213ENST00000530983 PIN4Q9Y237 131 aaKnown RBP19.64■□□□□ 0.74
VPS28-213ENST00000530983 SCN4AP35499 1836 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 NRCAMQ92823 1304 aa19.64■□□□□ 0.73
VPS28-213ENST00000530983 GLDCP23378 1020 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms