RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ARHGAP39Q9C0H5 1083 aa6.41□□□□□ -1.38
PCF11-202ENST00000528336 MTMR4Q9NYA4 1195 aa6.41□□□□□ -1.38
PCF11-202ENST00000528336 C9orf78Q9NZ63 289 aaPredicted RBP6.41□□□□□ -1.38
PCF11-202ENST00000528336 FBXO4Q9UKT5 387 aa6.41□□□□□ -1.38
PCF11-202ENST00000528336 COL3A1P02461 1466 aaPredicted RBP6.41□□□□□ -1.38
PCF11-202ENST00000528336 KIAA0586Q9BVV6 1533 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 DYTNA2CJ06 578 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 PRSS47A8MTI9 375 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 B9A039 149 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 FAM155BO75949 473 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 NFATC1O95644 943 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 RXRAP19793 462 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 PPM1FP49593 454 aaPredicted RBP6.4□□□□□ -1.38
PCF11-202ENST00000528336 ZNF81P51508 661 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 CDK18Q07002 472 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 DCTN1Q14203 1278 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 PGM5Q15124 567 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 RABEP1Q15276 862 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 GPR162Q16538 588 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 ADCK5Q3MIX3 580 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 C1QTNF12Q5T7M4 302 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 PAPD7Q5XG87 772 aaKnown RBP6.4□□□□□ -1.38
PCF11-202ENST00000528336 SHC4Q6S5L8 630 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 RFX8Q6ZV50 586 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 MDGA2Q7Z553 956 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 UBE2Q1Q7Z7E8 422 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 ANKRD13BQ86YJ7 626 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 FTSJ3Q8IY81 847 aaKnown RBP6.4□□□□□ -1.38
PCF11-202ENST00000528336 EXD3Q8N9H8 876 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 FSIP1Q8NA03 581 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 OR52N4Q8NGI2 321 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 IGFBPL1Q8WX77 278 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 IP6K1Q92551 441 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 ZNF778Q96MU6 729 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 CLPBQ9H078 707 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 RMI1Q9H9A7 625 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 PLEKHA2Q9HB19 425 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 RABGAP1Q9Y3P9 1069 aa6.4□□□□□ -1.38
PCF11-202ENST00000528336 KIF21BO75037 1637 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 IRAK2O43187 625 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 HNRNPRO43390 633 aaKnown RBP6.39□□□□□ -1.39
PCF11-202ENST00000528336 TLR2O60603 784 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 CDK4P11802 303 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 LYL1P12980 280 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 SMAD1Q15797 465 aaKnown RBP6.39□□□□□ -1.39
PCF11-202ENST00000528336 SLC4A8Q2Y0W8 1093 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 TTLL5Q6EMB2 1281 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 LVRNQ6Q4G3 990 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 TMEM200AQ86VY9 491 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 ZNF354CQ86Y25 554 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 SLC2A12Q8TD20 617 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 THAP4Q8WY91 577 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 PIMREGQ9BSJ6 248 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 HDHD5Q9BXW7 423 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 AAMDCQ9H7C9 122 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 G6PC2Q9NQR9 355 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 TUBA8Q9NY65 449 aaPredicted RBP6.39□□□□□ -1.39
PCF11-202ENST00000528336 RNF7Q9UBF6 113 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 ZNF70Q9UC06 446 aaPredicted RBP6.39□□□□□ -1.39
PCF11-202ENST00000528336 SLC25A13Q9UJS0 675 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 UTS2RQ9UKP6 389 aa6.39□□□□□ -1.39
PCF11-202ENST00000528336 DPPA5A6NC42 116 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 CXorf65A6NEN9 183 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 TOP3BO95985 862 aaKnown RBP6.38□□□□□ -1.39
PCF11-202ENST00000528336 CHN1P15882 459 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 PRPH2P23942 346 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 CIITAP33076 1130 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 ARL4CP56559 192 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 ALDH1L2Q3SY69 923 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 C10orf76Q5T2E6 689 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 PXDC1Q5TGL8 231 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 RASGRP2Q7LDG7 609 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 ANKS1BQ7Z6G8 1248 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 CREBRFQ8IUR6 639 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.38□□□□□ -1.39
PCF11-202ENST00000528336 VPS52Q8N1B4 723 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 ENDOVQ8N8Q3 282 aaKnown RBP6.38□□□□□ -1.39
PCF11-202ENST00000528336 C16orf52Q8NHV5 167 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 WIPF2Q8TF74 440 aaPredicted RBP6.38□□□□□ -1.39
PCF11-202ENST00000528336 SECISBP2LQ93073 1101 aaKnown RBP6.38□□□□□ -1.39
PCF11-202ENST00000528336 SCLT1Q96NL6 688 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 NPAS1Q99742 590 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 TMLHEQ9NVH6 421 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 FEM1BQ9UK73 627 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 TNFSF13BQ9Y275 285 aa6.38□□□□□ -1.39
PCF11-202ENST00000528336 SHROOM2Q13796 1616 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 GOLGA3Q08378 1498 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 MCIDASD6RGH6 385 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 F8W810 466 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 TFRCP02786 760 aaKnown RBP6.37□□□□□ -1.39
PCF11-202ENST00000528336 RRM1P23921 792 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 ADPRHP54922 357 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 EIF5P55010 431 aaKnown RBP6.37□□□□□ -1.39
PCF11-202ENST00000528336 ALKBH1Q13686 389 aaKnown RBP6.37□□□□□ -1.39
PCF11-202ENST00000528336 RBMS2Q15434 407 aaKnown RBP6.37□□□□□ -1.39
PCF11-202ENST00000528336 MIDNQ504T8 468 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 C10orf25Q5T742 122 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 DEF8Q6ZN54 512 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 B4GALNT4Q76KP1 1039 aa6.37□□□□□ -1.39
PCF11-202ENST00000528336 ANKRD23Q86SG2 305 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms