RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PDZD8Q8NEN9 1154 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 OR52K1Q8NGK4 314 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 IGSF8Q969P0 613 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 CDK5RAP1Q96SZ6 601 aaKnown RBP21.17■□□□□ 0.98
VPS28-209ENST00000528142 NKIRAS1Q9NYS0 192 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 ZNF180Q9UJW8 692 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 HBS1LQ9Y450 684 aaKnown RBP21.17■□□□□ 0.98
VPS28-209ENST00000528142 ZNF840PA6NDX5 716 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 SPAG7O75391 227 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 CNTN5O94779 1100 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 INHBAP08476 426 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 NDST2P52849 883 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 RAB33AQ14088 237 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 RAP1GAP2Q684P5 730 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 TMEM199Q8N511 208 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 PPM1NQ8N819 430 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 USP33Q8TEY7 942 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 CKAP2Q8WWK9 683 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 OXNAD1Q96HP4 312 aaPredicted RBP21.16■□□□□ 0.98
VPS28-209ENST00000528142 SGSM3Q96HU1 749 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 MYRFLQ96LU7 910 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 FAM107BQ9H098 131 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 MLXIPLQ9NP71 852 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 SYBUQ9NX95 663 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 ZNF212Q9UDV6 495 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 IKBKGQ9Y6K9 419 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 PTPRSQ13332 1948 aa21.16■□□□□ 0.98
VPS28-209ENST00000528142 IQANK1A0A1B0GTG1 560 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CSH1P0DML2 217 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CSH2P0DML3 217 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 PGAM1P18669 254 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 KRT4P19013 534 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 ATP5C1P36542 298 aaKnown RBP21.15■□□□□ 0.98
VPS28-209ENST00000528142 WDR4P57081 412 aaKnown RBP21.15■□□□□ 0.98
VPS28-209ENST00000528142 MTA1Q13330 715 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 QPCTQ16769 361 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 NADSYN1Q6IA69 706 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 TIGD7Q6NT04 549 aaPredicted RBP21.15■□□□□ 0.98
VPS28-209ENST00000528142 OTOP3Q7RTS5 596 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CTAGE3PQ8IX95 158 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 NAT9Q9BTE0 207 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CYP4F11Q9HBI6 524 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 DNMT3LQ9UJW3 386 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CARNS1A5YM72 827 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 USP12O75317 370 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 FAM155BO75949 473 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 BAIAP3O94812 1187 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 KCNQ1P51787 676 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 CASC4Q6P4E1 433 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 KLHDC10Q6PID8 442 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 ZNF512Q96ME7 567 aaPredicted RBP21.15■□□□□ 0.98
VPS28-209ENST00000528142 FCRL5Q96RD9 977 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 DONSONQ9NYP3 566 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 YIPF1Q9Y548 306 aa21.15■□□□□ 0.98
VPS28-209ENST00000528142 PEX11BO96011 259 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 PRPSAP1Q14558 356 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 SH2D5Q6ZV89 423 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 TFAP2DQ7Z6R9 452 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 DYDC1Q8WWB3 177 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 NUP205Q92621 2012 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 FATE1Q969F0 183 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 TTC17Q96AE7 1141 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 LRRC40Q9H9A6 602 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 GLOD4Q9HC38 313 aa21.14■□□□□ 0.97
VPS28-209ENST00000528142 IPO11Q9UI26 975 aaKnown RBP21.14■□□□□ 0.97
VPS28-209ENST00000528142 GOLGA6L7A0A1B0GV03 622 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 PSMD3O43242 534 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 UGT1A9O60656 530 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 ASMTLO95671 621 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 URODP06132 367 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 LRRC34Q8IZ02 419 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 MYEOVQ96EZ4 313 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 UGT1A7Q9HAW7 530 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 UGT1A10Q9HAW8 530 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 UGT1A8Q9HAW9 530 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 GJB5O95377 273 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 RPA3P35244 121 aaPredicted RBP21.13■□□□□ 0.97
VPS28-209ENST00000528142 ALDH1A3P47895 512 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 CRYMQ14894 314 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 C5orf22Q49AR2 442 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 HECTD3Q5T447 861 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 TTC39BQ5VTQ0 682 aaPredicted RBP21.13■□□□□ 0.97
VPS28-209ENST00000528142 UNC5BQ8IZJ1 945 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 BANPQ8N9N5 519 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 GDAP1Q8TB36 358 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 ALKBH8Q96BT7 664 aaKnown RBP21.13■□□□□ 0.97
VPS28-209ENST00000528142 HMCESQ96FZ2 354 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 TRMT2BQ96GJ1 504 aaKnown RBP21.13■□□□□ 0.97
VPS28-209ENST00000528142 SERAC1Q96JX3 654 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 YME1L1Q96TA2 773 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 RBM22Q9NW64 420 aaKnown RBP eCLIP21.13■□□□□ 0.97
VPS28-209ENST00000528142 UBP1Q9NZI7 540 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 BFARQ9NZS9 450 aa21.13■□□□□ 0.97
VPS28-209ENST00000528142 MYO18AQ92614 2054 aaKnown RBP21.12■□□□□ 0.97
VPS28-209ENST00000528142 EBAG9O00559 213 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 COCHO43405 550 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 MT-ND3P03897 115 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 TACR2P21452 398 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 NIPAL4Q0D2K0 466 aa21.12■□□□□ 0.97
VPS28-209ENST00000528142 OTOP2Q7RTS6 562 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms