RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HOXA11P31270 313 aaPredicted RBP4.41□□□□□ -1.7
CD44-217ENST00000525348 PRKAA2P54646 552 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 POLE2P56282 527 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 KRTAP10-9P60411 292 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 PDCLQ13371 301 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 BLMHQ13867 455 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 TRIM14Q14142 442 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 BRD3Q15059 726 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 RPS6KA2Q15349 733 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 RUSC1-AS1Q66K80 236 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 DGAT2L7PQ6IED9 249 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 JMJD6Q6NYC1 403 aaPredicted RBP4.41□□□□□ -1.7
CD44-217ENST00000525348 CCDC25Q86WR0 208 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 C2CD4CQ8TF44 421 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 LPAR1Q92633 364 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 ARRDC3Q96B67 414 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 C3orf49Q96BT1 292 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 LYZL4Q96KX0 146 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 HERC2P3Q9BVR0 1158 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.41□□□□□ -1.7
CD44-217ENST00000525348 PNRC2Q9NPJ4 139 aaKnown RBP4.41□□□□□ -1.7
CD44-217ENST00000525348 TBC1D14Q9P2M4 693 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 INSL5Q9Y5Q6 135 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 A0A0U1RQG5 324 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 C17orf100A8MU93 164 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 GTPBP1O00178 669 aaKnown RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 IPO5O00410 1097 aaKnown RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 IKBKBO14920 756 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 SPTLC2O15270 562 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 LCKP06239 509 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 PLA2G2AP14555 144 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 PKMP14618 531 aaKnown RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 HOXB9P17482 250 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 KLRC2P26717 231 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 TKTP29401 623 aaKnown RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 AVPR2P30518 371 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CCKBRP32239 447 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 STAT1P42224 750 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 RFX5P48382 616 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 RHBDL3P58872 404 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 IRX6P78412 446 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 FOXO1Q12778 655 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 TRAF1Q13077 416 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CHAF1AQ13111 956 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 MORC3Q14149 939 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CCDC38Q502W7 563 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 ALG10Q5BKT4 473 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 ALG10BQ5I7T1 473 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 Q5PR19 223 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 WASHC2DQ5SRD0 308 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CCDC174Q6PII3 467 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CRELD2Q6UXH1 353 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 SYNE3Q6ZMZ3 975 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CCDC117Q8IWD4 279 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 SCN4BQ8IWT1 228 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 VPS52Q8N1B4 723 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 SLC25A41Q8N5S1 370 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 SAMD3Q8N6K7 520 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 C7orf57Q8NEG2 295 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 ENGASEQ8NFI3 743 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CMASQ8NFW8 434 aaPredicted RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 ADAMTS15Q8TE58 950 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 OIT3Q8WWZ8 545 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 CPT1BQ92523 772 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 TRAPPC9Q96Q05 1148 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 ISCUQ9H1K1 167 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 HIPK2Q9H2X6 1198 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 NDUFAF4Q9P032 175 aa4.4□□□□□ -1.71
CD44-217ENST00000525348 SRP68Q9UHB9 627 aaKnown RBP4.4□□□□□ -1.71
CD44-217ENST00000525348 A0A0A0MQY5 61 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 ACP5P13686 325 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 CHN1P15882 459 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 CHRNA5P30532 468 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 TNFSF8P32971 234 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 SLC16A2P36021 539 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 CDKN2AP42771 156 aaKnown RBP4.39□□□□□ -1.71
CD44-217ENST00000525348 PCP4P48539 62 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 PGGT1BP53609 377 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 ERV3-1Q14264 604 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 TIGD6Q17RP2 521 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 UBAP2Q5T6F2 1119 aaKnown RBP4.39□□□□□ -1.71
CD44-217ENST00000525348 VWA5B1Q5TIE3 1220 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 LVRNQ6Q4G3 990 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 PARM1Q6UWI2 310 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 SLC16A12Q6ZSM3 486 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 SYT13Q7L8C5 426 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 MYLK4Q86YV6 388 aaPredicted RBP4.39□□□□□ -1.71
CD44-217ENST00000525348 CSGALNACT1Q8TDX6 532 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 KCNJ9Q92806 393 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 ZNF479Q96JC4 524 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 PIGSQ96S52 555 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 WDR77Q9BQA1 342 aaPredicted RBP4.39□□□□□ -1.71
CD44-217ENST00000525348 CLPBQ9H078 707 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 RBM38Q9H0Z9 239 aaKnown RBP4.39□□□□□ -1.71
CD44-217ENST00000525348 MYLK2Q9H1R3 596 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 TASP1Q9H6P5 420 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 LRP12Q9Y561 859 aa4.39□□□□□ -1.71
CD44-217ENST00000525348 TRIP12Q14669 1992 aaPredicted RBP4.38□□□□□ -1.71
CD44-217ENST00000525348 CKAP5Q14008 2032 aa4.38□□□□□ -1.71
CD44-217ENST00000525348 RPS10-NUDT3A0A1W2PQS6 291 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms