RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ACSS2Q9NR19 701 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ZMYM2Q9UBW7 1377 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PSMD12O00232 456 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 BTN3A1O00481 513 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 FARP2O94887 1054 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 CPSF4O95639 269 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 MAPK10P53779 464 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PFKFB4Q16877 469 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 LPCAT2Q7L5N7 544 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 STK32CQ86UX6 486 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ZNF398Q8TD17 642 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 P2RY11Q96G91 374 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 MBOAT7Q96N66 472 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 SERPINB11Q96P15 392 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 KCTD14Q9BQ13 255 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 LRMDAQ9H2I8 198 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 GOLGA2P5Q9HBQ8 144 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PNPOQ9NVS9 261 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PCDHB5Q9Y5E4 795 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PGM3O95394 542 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 CDKN2BP42772 138 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PTGIRP43119 386 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 GRIA4P48058 902 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 VAC14Q08AM6 782 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 FSTL1Q12841 308 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 TJAP1Q5JTD0 557 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 APLFQ8IW19 511 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 CENPLQ8N0S6 344 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 BHLHE22Q8NFJ8 381 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 TRPM4Q8TD43 1214 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 C18orf25Q96B23 403 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 FAM120BQ96EK7 910 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 ADAM2Q99965 735 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 MRPL45Q9BRJ2 306 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 ADGRE3Q9BY15 652 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ELOVL4Q9GZR5 314 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 MMADHCQ9H3L0 296 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 RERGLQ9H628 205 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 CAB39LQ9H9S4 337 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PARVBQ9HBI1 364 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 XPNPEP1Q9NQW7 623 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 MON2Q7Z3U7 1717 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 EME2A4GXA9 379 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 A8MX80 341 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ALDH2P05091 517 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 POU1F1P28069 291 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ADSSP30520 456 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 FMO4P31512 558 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 HALP42357 657 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ATN1P54259 1190 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 NUP107P57740 925 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PATL1Q86TB9 770 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 LGI2Q8N0V4 545 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 B4GALNT2Q8NHY0 566 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 TFAP2BQ92481 460 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 FIG4Q92562 907 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 NDRG1Q92597 394 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 OTUB1Q96FW1 271 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 RMND5BQ96G75 393 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 SENP6Q9GZR1 1112 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 NXF3Q9H4D5 531 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 C2CD2Q9Y426 696 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 RPTORQ8N122 1335 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 YWHAQP27348 245 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 FCGRTP55899 365 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 MAXP61244 160 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 NOMO1Q15155 1222 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 NEDD8Q15843 81 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 C10orf107Q8IVU9 208 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 GPC2Q8N158 579 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 MRPS31Q92665 395 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 NKD2Q969F2 451 aaPredicted RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 LENG9Q96B70 501 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TINF2Q9BSI4 451 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SLC25A23Q9BV35 468 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PHACTR1Q9C0D0 580 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 FBXO44Q9H4M3 255 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SYBUQ9NX95 663 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PCDHA11Q9Y5I1 949 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 ADGRA3Q8IWK6 1321 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PRR23AA6NEV1 266 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 HNRNPLP14866 589 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP53-209ENST00000514665 LRPAP1P30533 357 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TREML2Q5T2D2 321 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PLPPR4Q7Z2D5 763 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TTC7BQ86TV6 843 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 GSTCDQ8NEC7 633 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 LPPQ93052 612 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 MIEF2Q96C03 454 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TLCD1Q96CP7 247 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 APOBEC3GQ9HC16 384 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 SEMA4BQ9NPR2 832 aaPredicted RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 ENTPD7Q9NQZ7 604 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TLR8Q9NR97 1041 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 SFMBT1Q9UHJ3 866 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 ZMYM5Q9UJ78 669 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PRRC2BQ5JSZ5 2229 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 URB1O60287 2271 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 LINC00854A0A1B0GVQ3 168 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms