RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZNF268Q14587 947 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 NAA25Q14CX7 972 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 AP5B1Q2VPB7 878 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 ARL13AQ5H913 290 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 SH2D4BQ5SQS7 431 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 AADACL2Q6P093 401 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF788Q6ZQV5 615 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 PTF1AQ7RTS3 328 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 ADGRG6Q86SQ4 1221 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF366Q8N895 744 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZCCHC10Q8TBK6 192 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 BCAS4Q8TDM0 211 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 NOC3LQ8WTT2 800 aaKnown RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 RFFLQ8WZ73 363 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 IP6K1Q92551 441 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 HDAC2Q92769 488 aaKnown RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 SORCS2Q96PQ0 1159 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 CADM1Q9BY67 442 aaKnown RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 AGXT2Q9BYV1 514 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 INTS2Q9H0H0 1204 aaKnown RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 TTC12Q9H892 705 aaPredicted RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 TMEM248Q9NWD8 314 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 WDR17Q8IZU2 1322 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 GOLGA6L10A0A0M3HER8 536 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TCRBV7S3A2A0A539 114 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC22A23A1A5C7 686 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TMEM247A6NEH6 219 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 MANSC4A6NHS7 340 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 HMGB1P1B2RPK0 211 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TSPAN4O14817 238 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 STRNO43815 780 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 NFATC1O95644 943 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 GJC1P36383 396 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 MTNR1AP48039 350 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 CDH15P55291 814 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 GEMIN4P57678 1058 aaKnown RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 RHAGQ02094 409 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 NHLH1Q02575 133 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZBTB16Q05516 673 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 LMOD3Q0VAK6 560 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC10A2Q12908 348 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TDGQ13569 410 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 SIM2Q14190 667 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 IL13RA2Q14627 380 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 EARS2Q5JPH6 523 aaKnown RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 MIS18BP1Q6P0N0 1132 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 GJB7Q6PEY0 223 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC22A25Q6T423 547 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF782Q6ZMW2 699 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 RD3Q7Z3Z2 195 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 ARL14EPQ8N8R7 260 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 RFWD2Q8NHY2 731 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TBC1D22AQ8WUA7 517 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 MRIQ9BWK5 157 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 R3HDMLQ9H3Y0 253 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 SMC4Q9NTJ3 1288 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 PPP1R14DQ9NXH3 145 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 FBXO4Q9UKT5 387 aa4.42□□□□□ -1.7
HMGB1P28-201ENST00000507778 TEX22C9J3V5 150 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 TNPO2O14787 897 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 MSI1O43347 362 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 HBP1O60381 514 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 TUBB4AP04350 444 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 FCGR2AP12318 317 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ABCD3P28288 659 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 CHRNA5P30532 468 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 GGT5P36269 586 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 CCT4P50991 539 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 PROK1P58294 105 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 STIM1Q13586 685 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 GALNT3Q14435 633 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 PLK5Q496M5 336 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF766Q5HY98 468 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 VWA5B1Q5TIE3 1220 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 MEX3CQ5U5Q3 659 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 NAPEPLDQ6IQ20 393 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ADGRG3Q86Y34 549 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ARMC8Q8IUR7 673 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ADGRF4Q8IZF3 695 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 SCAIQ8N9R8 606 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 TNIP2Q8NFZ5 429 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 RUFY2Q8WXA3 655 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 CNOT9Q92600 299 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ELP4Q96EB1 424 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 EYA3Q99504 573 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 CLSTN3Q9BQT9 956 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 VEZTQ9HBM0 779 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 MOV10Q9HCE1 1003 aaKnown RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 Q9N2J8 555 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 BEX4Q9NWD9 120 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 UPB1Q9UBR1 384 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 DHDHQ9UQ10 334 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 OSGIN2Q9Y236 505 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 COX11Q9Y6N1 276 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 ITIH6Q6UXX5 1313 aa4.41□□□□□ -1.7
HMGB1P28-201ENST00000507778 CYP2D7A0A087X1C5 515 aa4.4□□□□□ -1.71
HMGB1P28-201ENST00000507778 DPPA5A6NC42 116 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms