RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SYNCQ9H7C4 482 aa11.88□□□□□ -0.51
HMGCS1-204ENST00000507293 PLCB1Q9NQ66 1216 aa11.88□□□□□ -0.51
HMGCS1-204ENST00000507293 SLC25A13Q9UJS0 675 aa11.88□□□□□ -0.51
HMGCS1-204ENST00000507293 DNAJC12Q9UKB3 198 aa11.88□□□□□ -0.51
HMGCS1-204ENST00000507293 HS3ST4Q9Y661 456 aa11.88□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3DA0A087WVF3 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3IA0A087WXS9 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3EA0A087X179 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3KA0A087X1G2 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3FA6NER0 549 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3LB9A6J9 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 M0QYT0 321 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 RTN2O75298 545 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 PAGE1O75459 146 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3HP0C7X1 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 HOXB3P14651 431 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 CLCN1P35523 988 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 KRT9P35527 623 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 SLC6A3Q01959 620 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 ZNF177Q13360 481 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 SHBQ15464 509 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 MAN2A1Q16706 1144 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TPD52L1Q16890 204 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 ACCSLQ4AC99 568 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 SLC45A4Q5BKX6 768 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3GQ6DHY5 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3CQ6IPX1 549 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 Q6ZVU0 165 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 SLC26A9Q7LBE3 791 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 DSG4Q86SJ6 1040 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 C14orf80Q86SX3 495 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 TBC1D3Q8IZP1 549 aaPredicted RBP11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 GALNT15Q8N3T1 639 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 MLKLQ8NB16 471 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 SERAC1Q96JX3 654 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 PPP1R9BQ96SB3 815 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 GDF3Q9NR23 364 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 VPS28Q9UK41 221 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 OR51B4Q9Y5P0 310 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 MYLKQ15746 1914 aa11.87□□□□□ -0.51
HMGCS1-204ENST00000507293 FAM149AA5PLN7 773 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 C1QTNF3-AMACRE9PGA6 284 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 CBX4O00257 560 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 FOXN3O00409 490 aaPredicted RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SLC7A4O43246 635 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 LATO43561 262 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 ATP9BO43861 1147 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 ITGAVP06756 1048 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 TFE3P19532 575 aaPredicted RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 MAT2AP31153 395 aaKnown RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 NOS2P35228 1153 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SULT1E1P49888 294 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 VASPP50552 380 aaPredicted RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SNX16P57768 344 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 NXPH1P58417 271 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 MTA1Q13330 715 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 DLG2Q15700 870 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 POM121L1PQ3SYA9 428 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 NAPEPLDQ6IQ20 393 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 C19orf48Q6RUI8 117 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 DHRS13Q6UX07 377 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 PRPF39Q86UA1 669 aaKnown RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 ZNF397Q8NF99 534 aaPredicted RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 PIP4K2CQ8TBX8 421 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 FAM131CQ96AQ9 280 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 NPY6RQ99463 290 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 FEM1AQ9BSK4 669 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SIK2Q9H0K1 926 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 MUC3BQ9H195 1237 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 ANLNQ9NQW6 1124 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 PIGVQ9NUD9 493 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SARDHQ9UL12 918 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 TPX2Q9ULW0 747 aaKnown RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 GPSM3Q9Y4H4 160 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 SNX10Q9Y5X0 201 aa11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 GOLGA4Q13439 2230 aaKnown RBP11.86□□□□□ -0.51
HMGCS1-204ENST00000507293 FAM170AA1A519 330 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 I6L893 689 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 TLR4O00206 839 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 ENC1O14682 589 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 ALOX15BO15296 676 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 YKT6O15498 198 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 PLRG1O43660 514 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 BNIP3LO60238 219 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 CLDN11O75508 207 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 CNTN5O94779 1100 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 ADCY5O95622 1261 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 LDOC1O95751 146 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 RHOCP08134 193 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 EPHA8P29322 1005 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 ARRB1P49407 418 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 CDH4P55283 916 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 RNASE9P60153 205 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 CNTN1Q12860 1018 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 RAPGEF1Q13905 1077 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 SMAD1Q15797 465 aaKnown RBP11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 C5orf22Q49AR2 442 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 ALFQ53S48 1182 aa11.85□□□□□ -0.51
HMGCS1-204ENST00000507293 MIIPQ5JXC2 388 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms