RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ILVBLA1L0T0 632 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 EIF3CLB5ME19 914 aaKnown RBP16.8■□□□□ 0.28
SF3A1-209ENST00000496189 I6L893 689 aaPredicted RBP16.8■□□□□ 0.28
SF3A1-209ENST00000496189 RHOQP17081 205 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 MAPKAPK2P49137 400 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 IRAK1P51617 712 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 GALCP54803 685 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 CREB5Q02930 508 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 SPEM2Q0P670 501 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 ACAP1Q15027 740 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 MAP7D1Q3KQU3 841 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 RETSATQ6NUM9 610 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 DSG4Q86SJ6 1040 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 DNAAF5Q86Y56 855 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 ZNF683Q8IZ20 524 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 DCLK2Q8N568 766 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 EIF3CQ99613 913 aaKnown RBP16.8■□□□□ 0.28
SF3A1-209ENST00000496189 MKRN2Q9H000 416 aaKnown RBP16.8■□□□□ 0.28
SF3A1-209ENST00000496189 THAP2Q9H0W7 228 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 ARRDC1-AS1Q9H2J1 176 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 CATSPERBQ9H7T0 1116 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 CD248Q9HCU0 757 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 PRSS16Q9NQE7 514 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 HPCAL4Q9UM19 191 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 NCKAP1Q9Y2A7 1128 aa16.8■□□□□ 0.28
SF3A1-209ENST00000496189 VPS13AQ96RL7 3174 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 DMDP11532 3685 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 EML5Q05BV3 1969 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 CREB3O43889 395 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 LRIG2O94898 1065 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 CYP1A2P05177 515 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 BCKDHBP21953 392 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 EPHB2P29323 1055 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 CD6P30203 668 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 L1CAMP32004 1257 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 HTR7P34969 479 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 CTSOP43234 321 aaPredicted RBP16.79■□□□□ 0.28
SF3A1-209ENST00000496189 COPAP53621 1224 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 PIGHQ14442 188 aaPredicted RBP16.79■□□□□ 0.28
SF3A1-209ENST00000496189 RAB6CQ53S08 254 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 LYSMD4Q5XG99 296 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 ZNF354CQ86Y25 554 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 CACUL1Q86Y37 369 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 C12orf50Q8NA57 414 aaPredicted RBP16.79■□□□□ 0.28
SF3A1-209ENST00000496189 DCAF4L2Q8NA75 395 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 GANCQ8TET4 914 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 FOXJ1Q92949 421 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 MRGPRX3Q96LB0 322 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 SPON2Q9BUD6 331 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 RAB6CQ9H0N0 254 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 SLC6A17Q9H1V8 727 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 ATP13A1Q9HD20 1204 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 ITM2CQ9NQX7 267 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 SPTLC3Q9NUV7 552 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 LCMT1Q9UIC8 334 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 FZD10Q9ULW2 581 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 NENFQ9UMX5 172 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 AP4E1Q9UPM8 1137 aa16.79■□□□□ 0.28
SF3A1-209ENST00000496189 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 IGHV1OR15-9A0A0B4J2B8 117 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 TTC34A8MYJ7 566 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 CBX4O00257 560 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 FGF10O15520 208 aaPredicted RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 DAPK3O43293 454 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 TMEM253P0C7T8 217 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 MPLP40238 635 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 RECQLP46063 649 aaPredicted RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 NUMBP49757 651 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 STK19P49842 368 aaPredicted RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 VASPP50552 380 aaPredicted RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 GEMIN4P57678 1058 aaKnown RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 TPI1P60174 286 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 GNA12Q03113 381 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 LMNB2Q03252 620 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 CSRP2Q16527 193 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 SYCP2LQ5T4T6 812 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 ERMARDQ5T6L9 678 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 IL31Q6EBC2 164 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 RABEPKQ7Z6M1 372 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 TMEFF1Q8IYR6 380 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 ATP11CQ8NB49 1132 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 BAG1Q99933 345 aaPredicted RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 NUP85Q9BW27 656 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 VPS45Q9NRW7 570 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 SEMA4GQ9NTN9 838 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 TMEM248Q9NWD8 314 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 USP36Q9P275 1121 aaKnown RBP16.78■□□□□ 0.28
SF3A1-209ENST00000496189 CTTNBP2NLQ9P2B4 639 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 UVRAGQ9P2Y5 699 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 PCSK1NQ9UHG2 260 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 IP6K2Q9UHH9 426 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 SLCO3A1Q9UIG8 710 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 ANAPC7Q9UJX3 599 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 INTUQ9ULD6 942 aa16.78■□□□□ 0.28
SF3A1-209ENST00000496189 CKAP5Q14008 2032 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 MUC22E2RYF6 1773 aaPredicted RBP16.77■□□□□ 0.28
SF3A1-209ENST00000496189 PRR5-ARHGAP8B1AHC4 643 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 MYO1FO00160 1098 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 RAMP2O60895 175 aa16.77■□□□□ 0.28
SF3A1-209ENST00000496189 SIN3BO75182 1162 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms