RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 RSPRY1Q96DX4 576 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 CELF6Q96J87 481 aaKnown RBP12.97□□□□□ -0.33
VPS52-220ENST00000493674 HINFPQ9BQA5 517 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 DPH5Q9H2P9 285 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 GDE1Q9NZC3 331 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 ASIC3Q9UHC3 531 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 CDH22Q9UJ99 828 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 SNX24Q9Y343 169 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
VPS52-220ENST00000493674 XIRP2A4UGR9 3374 aa12.97□□□□□ -0.33
VPS52-220ENST00000493674 TCF20Q9UGU0 1960 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 SCN8AQ9UQD0 1980 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 A0A0A0MRY4 1105 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 ILVBLA1L0T0 632 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 RASA4BC9J798 803 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 RNF103O00237 685 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 DNALI1O14645 258 aaPredicted RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 TRDMT1O14717 391 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 RASA4O43374 803 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 OPHN1O60890 802 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PEX11BO96011 259 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 ITIH2P19823 946 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 FCARP24071 287 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PTPN3P26045 913 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 HOXD9P28356 352 aaPredicted RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 CHKAP35790 457 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PAPOLAP51003 745 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 CLCN6P51797 869 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 TNK2Q07912 1038 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 CBLBQ13191 982 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 CBX2Q14781 532 aaPredicted RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 TRIP13Q15645 432 aaPredicted RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 RNASEH2BQ5TBB1 312 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 ARHGAP36Q6ZRI8 547 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 SETD3Q86TU7 594 aaPredicted RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 KLHDC8BQ8IXV7 354 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 CCDC13Q8IYE1 715 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 ATPAF2Q8N5M1 289 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 CELF5Q8N6W0 485 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 OR52K2Q8NGK3 314 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 FGF13Q92913 245 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 OTUB2Q96DC9 234 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PABPC5Q96DU9 382 aaKnown RBP12.96□□□□□ -0.33
VPS52-220ENST00000493674 HMCESQ96FZ2 354 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 SPATA13Q96N96 652 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 ASB16Q96NS5 453 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 LRRC3BQ96PB8 259 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 IL12RB2Q99665 862 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 TRIM31Q9BZY9 425 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 MAGEH1Q9H213 219 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PDFQ9HBH1 243 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 OBP2AQ9NY56 170 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 PAK5Q9P286 719 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 NFU1Q9UMS0 254 aa12.96□□□□□ -0.33
VPS52-220ENST00000493674 NCOR1O75376 2440 aa12.96□□□□□ -0.34
VPS52-220ENST00000493674 ARHGAP42A6NI28 874 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 DFFAO00273 331 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 NDC80O14777 642 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 SCAMP3O14828 347 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 TSPAN3O60637 253 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 RAMP2O60895 175 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 LUC7L3O95232 432 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 PENKP01210 267 aaPredicted RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 IFNB1P01574 187 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 OR1E1P30953 314 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 AP1B1Q10567 949 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 GPS1Q13098 491 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 SERINC3Q13530 473 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 MPPE1Q53F39 396 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 FAM78AQ5JUQ0 283 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 FYB2Q5VWT5 728 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 HIBCHQ6NVY1 386 aaPredicted RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 GSPT2Q8IYD1 628 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 ZNF567Q8N184 647 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 MICALL1Q8N3F8 863 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 TDRD5Q8NAT2 981 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 BBOF1Q8ND07 529 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 FBXO25Q8TCJ0 367 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 DEPDC1BQ8WUY9 529 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 SMARCD2Q92925 531 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 ARHGEF2Q92974 986 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 CAVIN3Q969G5 261 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 LRRC45Q96CN5 670 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 ZNF419Q96HQ0 510 aaPredicted RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 LMLNQ96KR4 655 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 VAT1Q99536 393 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 ACE2Q9BYF1 805 aaPredicted RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 MARK1Q9P0L2 795 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 IGSF9Q9P2J2 1179 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 TBC1D14Q9P2M4 693 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 THEGQ9P2T0 379 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 SHOC2Q9UQ13 582 aa12.95□□□□□ -0.34
VPS52-220ENST00000493674 ZNF106Q9H2Y7 1883 aaKnown RBP12.95□□□□□ -0.34
VPS52-220ENST00000493674 MATN3O15232 486 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 CACNG3O60359 315 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 PRAMEF11O60813 436 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 TBL1XO60907 577 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 ACVRL1P37023 503 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 ADCY8P40145 1251 aa12.94□□□□□ -0.34
VPS52-220ENST00000493674 VPS41P49754 854 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms