RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ADRA1BP35368 520 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 PRKCIP41743 596 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 LIMK1P53667 647 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 PPP1R15BQ5SWA1 713 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 RGL4Q8IZJ4 473 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 NUP58Q9BVL2 599 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 ZNF212Q9UDV6 495 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 EVLQ9UI08 416 aaPredicted RBP25.35■■□□□ 1.65
UPF3A-209ENST00000492270 TARSL2A2RTX5 802 aaKnown RBP25.34■■□□□ 1.65
UPF3A-209ENST00000492270 MEI4A8MW99 385 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 SNAP91O60641 907 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 CFIP05156 583 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 KLHL30Q0D2K2 578 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 FIGNQ5HY92 759 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 ACBD5Q5T8D3 534 aaPredicted RBP25.34■■□□□ 1.65
UPF3A-209ENST00000492270 ERMP1Q7Z2K6 904 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 STK40Q8N2I9 435 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 FOXJ1Q92949 421 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 EDEM3Q9BZQ6 932 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 IFNKQ9P0W0 207 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 SLC25A13Q9UJS0 675 aa25.34■■□□□ 1.65
UPF3A-209ENST00000492270 A0A0D9SEW6 157 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FAM72CH0Y354 149 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 DDX3XO00571 662 aaKnown RBP eCLIP25.33■■□□□ 1.653e-7■■■■□ 19.9
UPF3A-209ENST00000492270 NNMTP40261 264 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 DPP6P42658 865 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 ZBTB16Q05516 673 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 ARL13BQ3SXY8 428 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 TTC31Q49AM3 519 aaPredicted RBP25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FAM72AQ5TYM5 149 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 MANEALQ5VSG8 457 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 DCAF12L1Q5VU92 463 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FAM72DQ6L9T8 149 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 SLC23A3Q6PIS1 610 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 SETD3Q86TU7 594 aaPredicted RBP25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FAM72BQ86X60 149 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 MMAAQ8IVH4 418 aaKnown RBP25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FRS2Q8WU20 508 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 FAM129BQ96TA1 746 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 ZYG11BQ9C0D3 744 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 PABPC3Q9H361 631 aaKnown RBP25.33■■□□□ 1.65
UPF3A-209ENST00000492270 OR12D3Q9UGF7 316 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 SERGEFQ9UGK8 458 aa25.33■■□□□ 1.65
UPF3A-209ENST00000492270 CACNA1EQ15878 2313 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 C4orf47A7E2U8 309 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 MID1O15344 667 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 OR1E1P30953 314 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 HOXD12P35452 270 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 PSMD8P48556 350 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 ZNF143P52747 638 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-209ENST00000492270 OGDHQ02218 1023 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 CST6Q15828 149 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 DUOXA1Q1HG43 343 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 CADM4Q8NFZ8 388 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 OR7D4Q8NG98 312 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 PPP1R9BQ96SB3 815 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 NUSAP1Q9BXS6 441 aaKnown RBP25.32■■□□□ 1.64
UPF3A-209ENST00000492270 C6orf106Q9H6K1 298 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-209ENST00000492270 VPS51Q9UID3 782 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 NEU3Q9UQ49 428 aa25.32■■□□□ 1.64
UPF3A-209ENST00000492270 ASCC3Q8N3C0 2202 aaKnown RBP25.31■■□□□ 1.64
UPF3A-209ENST00000492270 METTL12A8MUP2 240 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 CDX4O14627 284 aaPredicted RBP25.31■■□□□ 1.64
UPF3A-209ENST00000492270 RNASEH1O60930 286 aaKnown RBP25.31■■□□□ 1.64
UPF3A-209ENST00000492270 MT-CO1P00395 513 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 GLDCP23378 1020 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 ACCSLQ4AC99 568 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 WDR45BQ5MNZ6 344 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 SYCP2LQ5T4T6 812 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 C6orf118Q5T5N4 469 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 IL31Q6EBC2 164 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 DCUN1D2Q6PH85 259 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 DRC7Q8IY82 874 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 SH2D3CQ8N5H7 860 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 OSBPL2Q9H1P3 480 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 CAPN10Q9HC96 672 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 PPARGC1AQ9UBK2 798 aaKnown RBP25.31■■□□□ 1.64
UPF3A-209ENST00000492270 SPTBN2O15020 2390 aa25.31■■□□□ 1.64
UPF3A-209ENST00000492270 TMEM131Q92545 1883 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 A0A1W2PP55 124 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 A0A1W2PQJ5 194 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 MED19A0JLT2 244 aaPredicted RBP25.3■■□□□ 1.64
UPF3A-209ENST00000492270 ANKRD62A6NC57 917 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 ATP9BO43861 1147 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 SRCP12931 536 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 ENGP17813 658 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 VASPP50552 380 aaPredicted RBP25.3■■□□□ 1.64
UPF3A-209ENST00000492270 NRG1Q02297 640 aaPredicted RBP25.3■■□□□ 1.64
UPF3A-209ENST00000492270 MAMLD1Q13495 774 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 DLG2Q15700 870 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 HGSNATQ68CP4 663 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 SCYL2Q6P3W7 929 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 LINGO4Q6UY18 593 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 Q6ZVU0 165 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 PYROXD2Q8N2H3 581 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 CEP76Q8TAP6 659 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 GANCQ8TET4 914 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 CPLX3Q8WVH0 158 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 NTAN1Q96AB6 310 aa25.3■■□□□ 1.64
UPF3A-209ENST00000492270 VCPIP1Q96JH7 1222 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms