RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	RABEPK	Q7Z6M1	372 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	PDZD3	Q86UT5	571 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	FAM35A	Q86V20	835 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	DDX42	Q86XP3	938 aa	Known RBP eCLIP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520	ETFBKMT	Q8IXQ9	262 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	CHPF	Q8IZ52	775 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	ALDH16A1	Q8IZ83	802 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	FUK	Q8N0W3	1084 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	TERB1	Q8NA31	727 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	SPC24	Q8NBT2	197 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	GALNT6	Q8NCL4	622 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	SCAMP5	Q8TAC9	235 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	IPO4	Q8TEX9	1081 aa	Known RBP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520	HNRNPLL	Q8WVV9	542 aa	Known RBP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520	GOLGA1	Q92805	767 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	KCNK16	Q96T55	309 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	AGPAT1	Q99943	283 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	LHX5	Q9H2C1	402 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	CCDC86	Q9H6F5	360 aa	Known RBP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520	SPHK2	Q9NRA0	654 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	ST7	Q9NRC1	585 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	KRT82	Q9NSB4	513 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	WASH3P	C4AMC7	463 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520		O00370	1275 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	XPO1	O14980	1071 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	EPHB6	O15197	1021 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	PTMA	P06454	111 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	PNMA6A	P0CW24	399 aa	Predicted RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	LCP1	P13796	627 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	ZNF132	P52740	706 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	ADK	P55263	362 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	CDR2	Q01850	454 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	PDE4C	Q08493	712 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	HECTD3	Q5T447	861 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	GRAMD4	Q6IC98	578 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	SDE2	Q6IQ49	451 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	DPY19L2P1	Q6NXN4	242 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	KIAA1324	Q6UXG2	1013 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	C1orf229	Q6ZS94	237 aa	Predicted RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	TPGS1	Q6ZTW0	290 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	TOGARAM2	Q6ZUX3	1019 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	SLCO6A1	Q86UG4	719 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	ERICH1	Q86X53	443 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	MARCH9	Q86YJ5	346 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	NAXD	Q8IW45	347 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	SIX6OS1	Q8N1H7	587 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	SETD7	Q8WTS6	366 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	EDARADD	Q8WWZ3	215 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	ADAMTS14	Q8WXS8	1223 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	TFAP2B	Q92481	460 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	BHMT	Q93088	406 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	HSFY1	Q96LI6	401 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC42	Q96M95	316 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	NACA2	Q9H009	215 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	HAUS4	Q9H6D7	363 aa		9.08	□□□□□ -0.96
USP4-213	ENST00000488520	DNAJC17	Q9NVM6	304 aa	Known RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	AJAP1	Q9UKB5	411 aa	Predicted RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	9.08	□□□□□ -0.96
USP4-213	ENST00000488520	SHISA8	B8ZZ34	492 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PRRT4	C9JH25	899 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	NEDD8-MDP1	E9PL57	170 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	HOXC11	O43248	304 aa	Predicted RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	AKR1B10	O60218	316 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	ZNF217	O75362	1048 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GJB3	O75712	270 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	IPO7	O95373	1038 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	LSM8	O95777	96 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	CALCA	P01258	141 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GYPC	P04921	128 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	MME	P08473	750 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	SKIL	P12757	684 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GNS	P15586	552 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	NSF	P46459	744 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	RGS7	P49802	495 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GSDMD	P57764	484 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	GRIK2	Q13002	908 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	HNRNPD	Q14103	355 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	MEA1	Q16626	185 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PREPL	Q4J6C6	727 aa	Predicted RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	SYCP2L	Q5T4T6	812 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	CCNI2	Q6ZMN8	369 aa	Predicted RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	CLEC20A	Q6ZU45	233 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PAQR9	Q6ZVX9	377 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	IRF2BP2	Q7Z5L9	587 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	NOP9	Q86U38	636 aa	Known RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PASD1	Q8IV76	773 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	ARHGAP18	Q8N392	663 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	KIAA1958	Q8N8K9	716 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PDZD8	Q8NEN9	1154 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	STK32A	Q8WU08	396 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	OTUB2	Q96DC9	234 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	ZNF419	Q96HQ0	510 aa	Predicted RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	LRIG1	Q96JA1	1093 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	HSH2D	Q96JZ2	352 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	PPP1R13B	Q96KQ4	1090 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	BBC3	Q96PG8	261 aa	Predicted RBP	9.07	□□□□□ -0.96
USP4-213	ENST00000488520	SMO	Q99835	787 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	BBS2	Q9BXC9	721 aa		9.07	□□□□□ -0.96
USP4-213	ENST00000488520	TTYH3	Q9C0H2	523 aa		9.07	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms