RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM200BP0CF97 657 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 SERPINB8P50452 374 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 LIMK2P53671 638 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 CACNA2D1P54289 1103 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 PPP2R5DQ14738 602 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 EDEM1Q92611 657 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 C20orf96Q9NUD7 363 aaPredicted RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 TMEM30AQ9NV96 361 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 NUP205Q92621 2012 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 MEIS3P2A8K0S8 358 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 G3V2L1 256 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 PTGESO14684 152 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 SAT1P21673 171 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 MFSD10Q14728 455 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 SLC9B1Q4ZJI4 515 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 TWF2Q6IBS0 349 aaKnown RBP18.33■□□□□ 0.53
VIM-206ENST00000487938 PDZD4Q76G19 769 aaPredicted RBP18.33■□□□□ 0.53
VIM-206ENST00000487938 HIPK4Q8NE63 616 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 URGCPQ8TCY9 931 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 CCDC124Q96CT7 223 aaKnown RBP18.33■□□□□ 0.53
VIM-206ENST00000487938 MS4A4AQ96JQ5 239 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 PPP1R36Q96LQ0 422 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 SMOQ99835 787 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 CASS4Q9NQ75 786 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 IARS2Q9NSE4 1012 aaKnown RBP18.33■□□□□ 0.53
VIM-206ENST00000487938 DDIT4Q9NX09 232 aa18.33■□□□□ 0.53
VIM-206ENST00000487938 PDCD11Q14690 1871 aaKnown RBP18.33■□□□□ 0.53
VIM-206ENST00000487938 TRIP12Q14669 1992 aaPredicted RBP18.33■□□□□ 0.52
VIM-206ENST00000487938 ENO4A6NNW6 628 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.33■□□□□ 0.52
VIM-206ENST00000487938 E9PBE3 544 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 KLHL41O60662 606 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 AP1G2O75843 785 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 F2P00734 622 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 C2P06681 752 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 UBTFL6P0CB48 400 aaPredicted RBP18.33■□□□□ 0.52
VIM-206ENST00000487938 NFKB1P19838 968 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 CYP2B6P20813 491 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 DAOAP59103 153 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 PPIDQ08752 370 aaKnown RBP18.33■□□□□ 0.52
VIM-206ENST00000487938 GRB14Q14449 540 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 LRRC36Q1X8D7 754 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 CFAP157Q5JU67 520 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 TMCO4Q5TGY1 634 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 RNF220Q5VTB9 566 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 DDX50Q9BQ39 737 aaKnown RBP18.33■□□□□ 0.52
VIM-206ENST00000487938 VCXQ9H320 206 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 GPAMQ9HCL2 828 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 SCOCQ9UIL1 159 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 FBXW11Q9UKB1 542 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 PCDHB12Q9Y5F1 795 aa18.33■□□□□ 0.52
VIM-206ENST00000487938 CENPFP49454 3210 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 MYBPHLA2RUH7 354 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 LTFP02788 710 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 CD1EP15812 388 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 ALOX15P16050 662 aaPredicted RBP18.32■□□□□ 0.52
VIM-206ENST00000487938 MAGEA12P43365 314 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 SEMA3BQ13214 749 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 CUL3Q13618 768 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 PCBP1Q15365 356 aaKnown RBP eCLIP18.32■□□□□ 0.523e-21■■□□□ 13.3
VIM-206ENST00000487938 KCTD11Q693B1 232 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 FRMD7Q6ZUT3 714 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 KCNMB4Q86W47 210 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 DEFB107AQ8IZN7 70 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 OR6Y1Q8NGX8 325 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 MAPK15Q8TD08 544 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 SLC26A7Q8TE54 656 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 S100A14Q9HCY8 104 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 ADAM28Q9UKQ2 775 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 GABRDO14764 452 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 ZBTB14O43829 449 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 NMBRP28336 390 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 CDK7P50613 346 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 AFF1P51825 1210 aaKnown RBP18.32■□□□□ 0.52
VIM-206ENST00000487938 OR52E8Q6IFG1 317 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 RAPH1Q70E73 1250 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 PHC3Q8NDX5 983 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 BRI3BPQ8WY22 251 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 GATA6Q92908 595 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 CELF6Q96J87 481 aaKnown RBP18.32■□□□□ 0.52
VIM-206ENST00000487938 SENP8Q96LD8 212 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 ECSITQ9BQ95 431 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 RHOBTB2Q9BYZ6 727 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 CDH19Q9H159 772 aa18.32■□□□□ 0.52
VIM-206ENST00000487938 GOLGA8QA0A0J9YX86 632 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 GOLGA8OA6NCC3 632 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 GOLGA8NF8WBI6 632 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 FKBP6O75344 327 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 JCHAINP01591 159 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 ITGAXP20702 1163 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 GRIK3Q13003 919 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 MPP3Q13368 585 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 TCHHL1Q5QJ38 904 aaPredicted RBP18.31■□□□□ 0.52
VIM-206ENST00000487938 EPGNQ6UW88 154 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 RNF111Q6ZNA4 994 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 HPS6Q86YV9 775 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 ZMIZ2Q8NF64 920 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 USP33Q8TEY7 942 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 ISL2Q96A47 359 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 CMTM5Q96DZ9 223 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms