RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PNPLA4P41247 253 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 ALDH7A1P49419 539 aaKnown RBP6.53□□□□□ -1.36
USP40-213ENST00000483216 ACTR2P61160 394 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 INPP5JQ15735 1006 aaPredicted RBP6.53□□□□□ -1.36
USP40-213ENST00000483216 ARL13AQ5H913 290 aaPredicted RBP6.53□□□□□ -1.36
USP40-213ENST00000483216 MANEAQ5SRI9 462 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 C6orf10Q5SRN2 563 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 SYNE3Q6ZMZ3 975 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 SCN4BQ8IWT1 228 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 FTSJ3Q8IY81 847 aaKnown RBP6.53□□□□□ -1.36
USP40-213ENST00000483216 AFG1LQ8WV93 481 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 CENPIQ92674 756 aaPredicted RBP6.53□□□□□ -1.36
USP40-213ENST00000483216 KCNJ9Q92806 393 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 AAMDCQ9H7C9 122 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 PPCSQ9HAB8 311 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 TMEM248Q9NWD8 314 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 COG5Q9UP83 839 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 B9A039 149 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 EPN2O95208 641 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 HLA-DQA2P01906 255 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 IGKV2-30P06310 120 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 GSTM2P28161 218 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 PMPCAQ10713 525 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 TAF5Q15542 800 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 PLK5Q496M5 336 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 GXYLT1Q4G148 440 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 ASPHD1Q5U4P2 390 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 SUGP1Q8IWZ8 645 aaKnown RBP6.52□□□□□ -1.37
USP40-213ENST00000483216 FRMD8Q9BZ67 464 aaPredicted RBP6.52□□□□□ -1.37
USP40-213ENST00000483216 CLPBQ9H078 707 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 CHODLQ9H9P2 273 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 Q9N2J8 555 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 ITM2CQ9NQX7 267 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 ZBTB40Q9NUA8 1239 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 KLQ9UEF7 1012 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 FEM1BQ9UK73 627 aa6.52□□□□□ -1.37
USP40-213ENST00000483216 WRNQ14191 1432 aaPredicted RBP eCLIP6.51□□□□□ -1.37
USP40-213ENST00000483216 EEA1Q15075 1411 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 IGLV5-39A0A0G2JS06 123 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 NDUFB8O95169 186 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 BMP15O95972 392 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 LYL1P12980 280 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 RPS6KA3P51812 740 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 THOC5Q13769 683 aaKnown RBP6.51□□□□□ -1.37
USP40-213ENST00000483216 EFR3AQ14156 821 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 ZNF484Q5JVG2 852 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 LRCH2Q5VUJ6 765 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 LDHAL6AQ6ZMR3 332 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 B4GALNT4Q76KP1 1039 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 KDELC2Q7Z4H8 507 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 GALNT7Q86SF2 657 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 PIM3Q86V86 326 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 HERC6Q8IVU3 1022 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 VPS52Q8N1B4 723 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 Q8N9P0 234 aaPredicted RBP6.51□□□□□ -1.37
USP40-213ENST00000483216 RILPL2Q969X0 211 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 HERC2P3Q9BVR0 1158 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 ZNF304Q9HCX3 659 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 FZD3Q9NPG1 666 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 RASSF1Q9NS23 344 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 DERAQ9Y315 318 aa6.51□□□□□ -1.37
USP40-213ENST00000483216 TCRBV7S3A2A0A539 114 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TMEM247A6NEH6 219 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 A6NNC1 897 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 CCNT1O60563 726 aaKnown RBP6.5□□□□□ -1.37
USP40-213ENST00000483216 ZC3H11AO75152 810 aaKnown RBP eCLIP6.5□□□□□ -1.37
USP40-213ENST00000483216 CSF1P09603 554 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 CHRNB1P11230 501 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TNFRSF1BP20333 461 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 AVPR2P30518 371 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 LEXMQ3ZCV2 418 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 ALG10Q5BKT4 473 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 ALG10BQ5I7T1 473 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 ANKRD45Q5TZF3 282 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 IGFN1Q86VF2 1251 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TMEM57Q8N5G2 664 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TMEM217Q8N7C4 229 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 ANKRD42Q8N9B4 389 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 C2CD4CQ8TF44 421 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TASP1Q9H6P5 420 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 RMI1Q9H9A7 625 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 RNF146Q9NTX7 359 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 THAP1Q9NVV9 213 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 PCDHGB3Q9Y5G1 929 aa6.5□□□□□ -1.37
USP40-213ENST00000483216 TMEM272A0A1B0GTI8 110 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 SAC3D1A6NKF1 404 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 PSG1P11464 419 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 CYP4B1P13584 511 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 TNNT1P13805 278 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 ARSAP15289 507 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 TYK2P29597 1187 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 SLC16A2P36021 539 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 CTXN3Q4LDR2 81 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 FBXO47Q5MNV8 452 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 AAGABQ6PD74 315 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 COLCA1Q6ZS62 124 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 TRAPPC11Q7Z392 1133 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 TRIM63Q969Q1 353 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 NLRP4Q96MN2 994 aa6.49□□□□□ -1.37
USP40-213ENST00000483216 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms