RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 RGSL1A5PLK6 1076 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 KCNU1A8MYU2 1149 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 IL18RAPO95256 599 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 VAPBO95292 243 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 ZNF286BP0CG31 522 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 INSRRP14616 1297 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 GMPSP49915 693 aaPredicted RBP12.96□□□□□ -0.33
VPS52-218ENST00000482399 TPI1P60174 286 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 MAP3K10Q02779 954 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 LSAMPQ13449 338 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 KCTD2Q14681 263 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 SH2D5Q6ZV89 423 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 SLC41A1Q8IVJ1 513 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 UBR7Q8N806 425 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 RNF169Q8NCN4 708 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 THAP11Q96EK4 314 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 LRRC40Q9H9A6 602 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 CDK5RAP2Q96SN8 1893 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 ZNF839A8K0R7 811 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 CLDN5O00501 218 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 TFEBP19484 476 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 CNTFP26441 200 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 ARRB2P32121 409 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 PLIN5Q00G26 463 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 CSHL1Q14406 222 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 SOWAHAQ2M3V2 549 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 ZBTB49Q6ZSB9 765 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 CTU1Q7Z7A3 348 aaKnown RBP12.96□□□□□ -0.33
VPS52-218ENST00000482399 PDZD8Q8NEN9 1154 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 TSPAN14Q8NG11 270 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 ZFP28Q8NHY6 868 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 EDEM1Q92611 657 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 C18orf25Q96B23 403 aaPredicted RBP12.96□□□□□ -0.33
VPS52-218ENST00000482399 OTUD5Q96G74 571 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 NOL11Q9H8H0 719 aaKnown RBP12.96□□□□□ -0.33
VPS52-218ENST00000482399 UBAP1Q9NZ09 502 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 TSR3Q9UJK0 312 aaKnown RBP12.96□□□□□ -0.33
VPS52-218ENST00000482399 COMMD10Q9Y6G5 202 aa12.96□□□□□ -0.33
VPS52-218ENST00000482399 HDAC3O15379 428 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 CCNT2O60583 730 aaKnown RBP12.96□□□□□ -0.34
VPS52-218ENST00000482399 MT-ND1P03886 318 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 MCF2P10911 925 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 CYP3A5P20815 502 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 RPL14P50914 215 aaKnown RBP12.96□□□□□ -0.34
VPS52-218ENST00000482399 INHBCP55103 352 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 MYLK3Q32MK0 819 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 METTL7BQ6UX53 244 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 LRTOMTQ8WZ04 291 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 IFT43Q96FT9 208 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 VPS39Q96JC1 886 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 THEGQ9P2T0 379 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 SNX10Q9Y5X0 201 aa12.96□□□□□ -0.34
VPS52-218ENST00000482399 B4GALT4O60513 344 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 CRCPO75575 148 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 TIPRLO75663 272 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 ASLP04424 464 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PABPC4LP0CB38 370 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 ARF4P18085 180 aaPredicted RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 MS4A2Q01362 244 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PAF1Q8N7H5 531 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 ACVR1CQ8NER5 493 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 RNF139Q8WU17 664 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 MPHOSPH6Q99547 160 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 ZNF670Q9BS34 389 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 UPF3AQ9H1J1 476 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 GOLGA2P5Q9HBQ8 144 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PDGFCQ9NRA1 345 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 XPR1Q9UBH6 696 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 EGFL7Q9UHF1 273 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 TIMM13Q9Y5L4 95 aaPredicted RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 SF3B1O75533 1304 aaKnown RBP eCLIP12.95□□□□□ -0.346e-6■■■■■ 31.6
VPS52-218ENST00000482399 STRNO43815 780 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 ARIH2O95376 493 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 L1CAMP32004 1257 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 SLC10A6Q3KNW5 377 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 IL23RQ5VWK5 629 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 OR6P1Q8NGX9 317 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 TMIGD2Q96BF3 282 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 SORT1Q99523 831 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 NDUFA13Q9P0J0 144 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 NOL3O60936 208 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 MOCS2O96007 188 aaPredicted RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 PTPN1P18031 435 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 GRM3Q14832 879 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 ANO4Q32M45 955 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 FAM219BQ5XKK7 198 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 ZNF567Q8N184 647 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 SIKE1Q9BRV8 207 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 HAUS8Q9BT25 410 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 EFHD1Q9BUP0 239 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PAIP1Q9H074 479 aaKnown RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 C1orf21Q9H246 121 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PRMT7Q9NVM4 692 aaPredicted RBP12.95□□□□□ -0.34
VPS52-218ENST00000482399 STK32BQ9NY57 414 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 LMCD1Q9NZU5 365 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 STK39Q9UEW8 545 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 PPME1Q9Y570 386 aa12.95□□□□□ -0.34
VPS52-218ENST00000482399 COL16A1Q07092 1604 aaPredicted RBP12.94□□□□□ -0.34
VPS52-218ENST00000482399 TRMUO75648 421 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms