RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 HSF5Q4G112 596 aaPredicted RBP7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 C2orf27AQ580R0 203 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 C10orf120Q5SQS8 335 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 LY6G5CQ5SRR4 150 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 TTI2Q6NXR4 508 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 LRFN4Q6PJG9 635 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 HTR3DQ70Z44 454 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ERMP1Q7Z2K6 904 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 CACNA2D4Q7Z3S7 1137 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 BBS7Q8IWZ6 715 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ARHGAP18Q8N392 663 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ZNF276Q8N554 614 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ANKRD52Q8NB46 1076 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 USP33Q8TEY7 942 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 RMDN1Q96DB5 314 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ZCCHC4Q9H5U6 513 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 NMUR1Q9HB89 426 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ARHGEF4Q9NR80 690 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 SPHK2Q9NRA0 654 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 OSER1Q9NX31 292 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 CLIC5Q9NZA1 410 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 EBF1Q9UH73 591 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 USP18Q9UMW8 372 aa7.13□□□□□ -1.27
CCDC88A-213ENST00000476903 ABCA7Q8IZY2 2146 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TBC1D3BA6NDS4 549 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 PRR5-ARHGAP8B1AHC4 643 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 XPO1O14980 1071 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 P4HA2O15460 535 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 GREM1O60565 184 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 FGFR1OPO95684 399 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 CBX7O95931 251 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 VDRP11473 427 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 CD19P15391 556 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 HOXC13P31276 330 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 GRIA2P42262 883 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TKTL1P51854 596 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 UBE2HP62256 183 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 COG7P83436 770 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 ARHGAP8P85298 464 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 NFKB2Q00653 900 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 KDSRQ06136 332 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 PDE4CQ08493 712 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 BST2Q10589 180 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 LRMPQ12912 555 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 PUM1Q14671 1186 aaKnown RBP eCLIP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 RAB41Q5JT25 222 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 LETMD1Q6P1Q0 360 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 DBX2Q6ZNG2 339 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TMPRSS7Q7RTY8 843 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 SCD5Q86SK9 330 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 PIGZQ86VD9 579 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TMEM25Q86YD3 366 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 MIB1Q86YT6 1006 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TRIML1Q8N9V2 468 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 MFSD2AQ8NA29 543 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TSTD1Q8NFU3 115 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 LOXL4Q96JB6 756 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 NT5C1BQ96P26 610 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 XPO6Q96QU8 1125 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 BBS2Q9BXC9 721 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 GCM1Q9NP62 436 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 POLR3BQ9NW08 1133 aaPredicted RBP7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 CHMP5Q9NZZ3 219 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 WDR35Q9P2L0 1181 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 DEC1Q9P2X7 70 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 HESX1Q9UBX0 185 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 NUDT5Q9UKK9 219 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 TSPAN16Q9UKR8 245 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 KIAA1257Q9ULG3 409 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 MMP17Q9ULZ9 603 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 ZNF510Q9Y2H8 683 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 CEP250Q9BV73 2442 aa7.12□□□□□ -1.27
CCDC88A-213ENST00000476903 NEDD8-MDP1E9PL57 170 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 MDM4O15151 490 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 CACNG3O60359 315 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TRIM13O60858 407 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TULP3O75386 442 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 STC2O76061 302 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 ALDH1A2O94788 518 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 RHOBTB1O94844 696 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 KLF8O95600 359 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 ZBED1O96006 694 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 PAEPP09466 180 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 SETSIPP0DME0 302 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TYRP14679 529 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TGM1P22735 817 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 KIR2DL1P43626 348 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DGKEP52429 567 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 STX17P56962 302 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 YWHAGP61981 247 aaKnown RBP eCLIP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 ELF2Q15723 593 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 CRY1Q16526 586 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 CSRP2Q16527 193 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 USP39Q53GS9 565 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 EOGTQ5NDL2 527 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 PM20D1Q6GTS8 502 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 GRAMD4Q6IC98 578 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TMEM270Q6UE05 265 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TPGS1Q6ZTW0 290 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms