RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF683Q8IZ20 524 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MLKLQ8NB16 471 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PGAP3Q96FM1 320 aaPredicted RBP12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC6A18Q96N87 628 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SPAG5Q96R06 1193 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NPY6RQ99463 290 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 KDM4CQ9H3R0 1056 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ANLNQ9NQW6 1124 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DDIT4Q9NX09 232 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PPM1HQ9ULR3 514 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 HS3ST4Q9Y661 456 aa12.62□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 IGSF10Q6WRI0 2623 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MYLKQ15746 1914 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GRAP2O75791 330 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RNASEH2AO75792 299 aaKnown RBP12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ABCB4P21439 1286 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CD38P28907 300 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CXCR3P49682 368 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CCT8P50990 548 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PTK2Q05397 1052 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 KCNMA1Q12791 1236 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MIIPQ5JXC2 388 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 KANSL1Q7Z3B3 1105 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 BNIPLQ7Z465 357 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C1orf131Q8NDD1 294 aaKnown RBP12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SAP25Q8TEE9 199 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ELF4Q99607 663 aaPredicted RBP12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OMDQ99983 421 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ACE2Q9BYF1 805 aaPredicted RBP12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ARHGEF38Q9NXL2 777 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DNAJC12Q9UKB3 198 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GPSM3Q9Y4H4 160 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 BAHCC1Q9P281 2608 aa12.61□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FAM47DPA6NHR8 397 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DRGXA6NNA5 263 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MCF2LO15068 1137 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SLC7A4O43246 635 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PLRG1O43660 514 aaKnown RBP12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PAGE1O75459 146 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CLDN11O75508 207 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DAB1O75553 588 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 IL1BP01584 269 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TFE3P19532 575 aaPredicted RBP12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SCNN1AP37088 669 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NNMTP40261 264 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 USP8P40818 1118 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RXRGP48443 463 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PSMD8P48556 350 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PPP2CBP62714 309 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PPP2CAP67775 309 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CENPCQ03188 943 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RABGAP1LQ5R372 815 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PRAMEF14Q5SWL7 426 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RNF219Q5W0B1 726 aaPredicted RBP12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OR6B2Q6IFH4 312 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ZDHHC17Q8IUH5 632 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PASD1Q8IV76 773 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SH2D3CQ8N5H7 860 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 OR14C36Q8NHC7 312 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GANCQ8TET4 914 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C1orf74Q96LT6 269 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PPP1R9BQ96SB3 815 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NAA15Q9BXJ9 866 aaKnown RBP12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 FAM204AQ9H8W3 233 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ERVMER34-1Q9H9K5 563 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PIGVQ9NUD9 493 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RRN3Q9NYV6 651 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ZNF212Q9UDV6 495 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 VANGL2Q9ULK5 521 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 HS3ST2Q9Y278 367 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TRPM6Q9BX84 2022 aa12.6□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TDRD6O60522 2096 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 IGLV3-10A0A075B6K4 115 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 M0QYT0 321 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TLR4O00206 839 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ALOX15BO15296 676 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CNTN5O94779 1100 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ADCY5O95622 1261 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MT-CO1P00395 513 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PNMA6AP0CW24 399 aaPredicted RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 CDH4P55283 916 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 C21orf59P57076 290 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NXPH1P58417 271 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TAS2R38P59533 333 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 DLG2Q15700 870 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MAN2A1Q16706 1144 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 BRMS1LQ5PSV4 323 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 AGBL4Q5VU57 503 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 ADAT2Q7Z6V5 191 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 IQCHQ86VS3 1027 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TRIM69Q86WT6 500 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 SPATS2Q86XZ4 545 aaKnown RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 GALNT15Q8N3T1 639 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MFSD2AQ8NA29 543 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 MDM1Q8TC05 714 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 TSC1Q92574 1164 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 RPRD1AQ96P16 312 aaPredicted RBP12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 NOX5Q96PH1 765 aa12.59□□□□□ -0.39
MSH5-SAPCD1-205ENST00000476085 PSMB7Q99436 277 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms