RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TCP11X2Q5H9J9 407 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ZNF683Q8IZ20 524 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 PNPLA1Q8N8W4 532 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 TMEM35BQ8NCS4 154 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 OR2T34Q8NGX1 318 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ADAMTS14Q8WXS8 1223 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM131CQ96AQ9 280 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC6A18Q96N87 628 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 OMDQ99983 421 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 FEM1AQ9BSK4 669 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 TOR4AQ9NXH8 423 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 ARHGEF38Q9NXL2 777 aa19.34■□□□□ 0.69
CCDC88B-206ENST00000473405 IGSF10Q6WRI0 2623 aa19.33■□□□□ 0.69
CCDC88B-206ENST00000473405 COL5A1P20908 1838 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-206ENST00000473405 LRRC72A6NJI9 287 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 F8VZ95 297 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 CLDN11O75508 207 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 IL1BP01584 269 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 UCHL3P15374 230 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 GOT1P17174 413 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 C5AR1P21730 350 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 EEF1GP26641 437 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 RDXP35241 583 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 SCNN1AP37088 669 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 OXCT1P55809 520 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 RACK1P63244 317 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 SFSWAPQ12872 951 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 NOP9Q86U38 636 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 SLCO6A1Q86UG4 719 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 XYLT1Q86Y38 959 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 PGAP3Q96FM1 320 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 SPAG5Q96R06 1193 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 TKTL2Q9H0I9 626 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 SIK2Q9H0K1 926 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 RRN3Q9NYV6 651 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 TBC1D30Q9Y2I9 924 aa19.33■□□□□ 0.68
CCDC88B-206ENST00000473405 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 H0Y8X5 98 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 KCNK3O14649 394 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 ATP9BO43861 1147 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 CNTN5O94779 1100 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 NNMTP40261 264 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 SULT1E1P49888 294 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 CCR5P51681 352 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 RNASE9P60153 205 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 ZNF177Q13360 481 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 ALFQ53S48 1182 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 C2CD6Q53TS8 623 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 BRMS1LQ5PSV4 323 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 ARTNQ5T4W7 220 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 FAM102AQ5T9C2 384 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 TAF3Q5VWG9 929 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 TRNP1Q6NT89 227 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 CLEC17AQ6ZS10 378 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 SND1Q7KZF4 910 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 EPS8L1Q8TE68 723 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 ZCCHC14Q8WYQ9 949 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 C18orf8Q96DM3 657 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 TBCBQ99426 244 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 VPS28Q9UK41 221 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 SARDHQ9UL12 918 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 SNX10Q9Y5X0 201 aa19.32■□□□□ 0.68
CCDC88B-206ENST00000473405 PLK4O00444 970 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 PES1O00541 588 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 WNT9AO14904 365 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 VILLO15195 856 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 DKK1O94907 266 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 LSM8O95777 96 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 WNT1P04628 370 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 FLT3P36888 993 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 CCT8P50990 548 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 CDH4P55283 916 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 PPP2CBP62714 309 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 PPP2CAP67775 309 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 SLC25A52Q3SY17 297 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 CT47A1Q5JQC4 288 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 Q6ZVU0 165 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 BNIPLQ7Z465 357 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 ADAT2Q7Z6V5 191 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 OR14C36Q8NHC7 312 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 ACE2Q9BYF1 805 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 STK33Q9BYT3 514 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 GANQ9H2C0 597 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 PDCL3Q9H2J4 239 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 WDCPQ9H6R7 721 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 TMPRSS4Q9NRS4 437 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 LMBRD1Q9NUN5 540 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 TAB2Q9NYJ8 693 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 SLC25A13Q9UJS0 675 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 STAP1Q9ULZ2 295 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 APOBEC2Q9Y235 224 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 CHD5Q8TDI0 1954 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 APC2O95996 2303 aa19.31■□□□□ 0.68
CCDC88B-206ENST00000473405 LATO43561 262 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 PCDHGA12O60330 932 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 MMEP08473 750 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 NOMO3P69849 1222 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 DEUP1Q05D60 604 aa19.3■□□□□ 0.68
CCDC88B-206ENST00000473405 DLG2Q15700 870 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms