RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PPP1R2P3Q6NXS1 205 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 MMS22LQ6ZRQ5 1243 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 METTL3Q86U44 580 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 XYLT1Q86Y38 959 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 CNGA4Q8IV77 575 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 CHPFQ8IZ52 775 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 TOE1Q96GM8 510 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 ACOX2Q99424 681 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 C11orf70Q9BRQ4 267 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 SEMA4CQ9C0C4 833 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC6A17Q9H1V8 727 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 ABHD10Q9NUJ1 306 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 DNAJC17Q9NVM6 304 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 FBXO10Q9UK96 956 aa12.33□□□□□ -0.44
SQSTM1-206ENST00000466342 A0A1B0GVT2 93 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC12A8A0AV02 714 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 METTL12A8MUP2 240 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DDX3XO00571 662 aaKnown RBP eCLIP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DAB1O75553 588 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 PLEKP08567 350 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 CISD3P0C7P0 127 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 CDK4P11802 303 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 GZMAP12544 262 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DGKGP49619 791 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 CSRP3P50461 194 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ADKP55263 362 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 C1QBPQ07021 282 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 TAF5Q15542 800 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 FAM102AQ5T9C2 384 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DCAF12L1Q5VU92 463 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 SYPL2Q5VXT5 272 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ACAD10Q6JQN1 1059 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 KIAA1324Q6UXG2 1013 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 MON1BQ7L1V2 547 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 VPS36Q86VN1 386 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 SPACA3Q8IXA5 215 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DRC7Q8IY82 874 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 CPXM2Q8N436 756 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 C1orf216Q8TAB5 229 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 DQX1Q8TE96 717 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 PLD4Q96BZ4 506 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ERLEC1Q96DZ1 483 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC2A13Q96QE2 648 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 GABRG3Q99928 467 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ITM2CQ9NQX7 267 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ADAM22Q9P0K1 906 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 ARHGAP20Q9P2F6 1191 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 SFMBT1Q9UHJ3 866 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 EIF2B4Q9UI10 523 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 AGO1Q9UL18 857 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 NAALADL1Q9UQQ1 740 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 HBS1LQ9Y450 684 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 PCDHGA1Q9Y5H4 931 aa12.32□□□□□ -0.44
SQSTM1-206ENST00000466342 AKR1B15C9JRZ8 316 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 TRIM24O15164 1050 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC28A2O43868 658 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 PCDHGA12O60330 932 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 GRAP2O75791 330 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 PENKP01210 267 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 IGLV3-27P01718 113 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 CALB1P05937 261 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 CORO1AP31146 461 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 CSNK1EP49674 416 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 CCDC173Q0VFZ6 552 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 TARDBPQ13148 414 aaKnown RBP eCLIP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 NNTQ13423 1086 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 LY6DQ14210 128 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 TRIP4Q15650 581 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 TSR1Q2NL82 804 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 DCAF6Q58WW2 860 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 FYB2Q5VWT5 728 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 WDR59Q6PJI9 974 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 DEFB106AQ8N104 65 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 VCPIP1Q96JH7 1222 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 SERPINB11Q96P15 392 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC2A11Q9BYW1 496 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 ZNHIT6Q9NWK9 470 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 TAS2R14Q9NYV8 317 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 SLC27A6Q9Y2P4 619 aa12.31□□□□□ -0.44
SQSTM1-206ENST00000466342 SSU72P8A0A1W2PR75 194 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 TMCO5BA8MYB1 307 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 PRRT4C9JH25 899 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 GOLGA8SH3BPF8 625 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 GFRA2O00451 464 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 MSI1O43347 362 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 ADCY5O95622 1261 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 IGLV3-25P01717 112 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 CYBBP04839 570 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 HMBSP08397 361 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 C1SP09871 688 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 CDC25BP30305 580 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 NOS2P35228 1153 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 ACTN2P35609 894 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 HARS2P49590 506 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 E2F5Q15329 346 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 ARCQ7LC44 396 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 TAC4Q86UU9 113 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 DENND1CQ8IV53 801 aa12.3□□□□□ -0.44
SQSTM1-206ENST00000466342 FAM217AQ8IXS0 508 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms